miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23033 5' -58.7 NC_005178.1 + 36066 0.66 0.429046
Target:  5'- gGCCCGCUG-GUGGGCaacGGGUgcgaccacggcuaucUGGGAGUa -3'
miRNA:   3'- -UGGGCGGCgUAUCCG---CUCG---------------ACCUUCG- -5'
23033 5' -58.7 NC_005178.1 + 23746 0.66 0.415608
Target:  5'- gGCuuGCCgGCAUGGGUGuGaUUGGGuuucucGGCg -3'
miRNA:   3'- -UGggCGG-CGUAUCCGCuC-GACCU------UCG- -5'
23033 5' -58.7 NC_005178.1 + 1736 0.66 0.406169
Target:  5'- uGCUCGCCGaacUGGGCcgccuuGAGCggacccgcgaGGAAGCg -3'
miRNA:   3'- -UGGGCGGCgu-AUCCG------CUCGa---------CCUUCG- -5'
23033 5' -58.7 NC_005178.1 + 28191 0.66 0.396866
Target:  5'- -gCCGgCGCccuGGCGAcuGCUGGcGGCa -3'
miRNA:   3'- ugGGCgGCGuauCCGCU--CGACCuUCG- -5'
23033 5' -58.7 NC_005178.1 + 4340 0.66 0.393184
Target:  5'- uACCCGCCGUcacgcucggcgcgaAUcucgucgAGGUGAGCcaGGgcGCg -3'
miRNA:   3'- -UGGGCGGCG--------------UA-------UCCGCUCGa-CCuuCG- -5'
23033 5' -58.7 NC_005178.1 + 37178 0.66 0.387701
Target:  5'- gACCCGCUGCGccuggAGGCcGAGUUuGAcGCc -3'
miRNA:   3'- -UGGGCGGCGUa----UCCG-CUCGAcCUuCG- -5'
23033 5' -58.7 NC_005178.1 + 27658 0.66 0.378677
Target:  5'- -gCCGCCGCugccGUGGGCaUGGgcGCg -3'
miRNA:   3'- ugGGCGGCGuaucCGCUCG-ACCuuCG- -5'
23033 5' -58.7 NC_005178.1 + 26193 0.66 0.378677
Target:  5'- -gCCGCUGC--GGGCGuggcGCUGGcucuGGCg -3'
miRNA:   3'- ugGGCGGCGuaUCCGCu---CGACCu---UCG- -5'
23033 5' -58.7 NC_005178.1 + 33900 0.66 0.378677
Target:  5'- uCCUGCCGCGccuggcGGCGAuGCUcGGcGGCc -3'
miRNA:   3'- uGGGCGGCGUau----CCGCU-CGA-CCuUCG- -5'
23033 5' -58.7 NC_005178.1 + 20222 0.67 0.369794
Target:  5'- gACCgUGCCGuCcgGGGCGuAGCUGaagacGggGCu -3'
miRNA:   3'- -UGG-GCGGC-GuaUCCGC-UCGAC-----CuuCG- -5'
23033 5' -58.7 NC_005178.1 + 15405 0.67 0.369794
Target:  5'- -gUgGCCGCAUGGGCGGcGaCUGGuAGGa -3'
miRNA:   3'- ugGgCGGCGUAUCCGCU-C-GACC-UUCg -5'
23033 5' -58.7 NC_005178.1 + 36413 0.67 0.361055
Target:  5'- uCUCGCCGUGgaacgGGGCGAcgauuacggacgGCgGGAAGUa -3'
miRNA:   3'- uGGGCGGCGUa----UCCGCU------------CGaCCUUCG- -5'
23033 5' -58.7 NC_005178.1 + 13472 0.67 0.361055
Target:  5'- cACCCGCuucCGUcu-GGUgGAGCUGGuAGCg -3'
miRNA:   3'- -UGGGCG---GCGuauCCG-CUCGACCuUCG- -5'
23033 5' -58.7 NC_005178.1 + 10352 0.67 0.335712
Target:  5'- cGCCgGgCUGCGcuGGcCGAGCUGGuGGGCa -3'
miRNA:   3'- -UGGgC-GGCGUauCC-GCUCGACC-UUCG- -5'
23033 5' -58.7 NC_005178.1 + 19883 0.67 0.334069
Target:  5'- gGCgCUGCCGUccuccagcuuGGgGAGCUGGAaagAGCa -3'
miRNA:   3'- -UG-GGCGGCGuau-------CCgCUCGACCU---UCG- -5'
23033 5' -58.7 NC_005178.1 + 17855 0.68 0.322735
Target:  5'- cGCCUGCCGCccucGGCGAGguccaggacgugcucCUGGAcccgguacgccAGCg -3'
miRNA:   3'- -UGGGCGGCGuau-CCGCUC---------------GACCU-----------UCG- -5'
23033 5' -58.7 NC_005178.1 + 7146 0.68 0.319551
Target:  5'- cCCCGUCGCGau-GCGcuGCUGGaAAGCg -3'
miRNA:   3'- uGGGCGGCGUaucCGCu-CGACC-UUCG- -5'
23033 5' -58.7 NC_005178.1 + 16512 0.68 0.311692
Target:  5'- -aUCGCgacucaGCGUGgcGGCGAGCUGGcGGGCa -3'
miRNA:   3'- ugGGCGg-----CGUAU--CCGCUCGACC-UUCG- -5'
23033 5' -58.7 NC_005178.1 + 2730 0.68 0.30398
Target:  5'- --aCGCCGCccUGGGCGAGgUGGccaccaAGGCg -3'
miRNA:   3'- uggGCGGCGu-AUCCGCUCgACC------UUCG- -5'
23033 5' -58.7 NC_005178.1 + 24813 0.68 0.296416
Target:  5'- gGCCUugaggGCCGCGUgguGGGUGAGCUGcucuucGAAGg -3'
miRNA:   3'- -UGGG-----CGGCGUA---UCCGCUCGAC------CUUCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.