miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23033 5' -58.7 NC_005178.1 + 1392 0.69 0.247546
Target:  5'- gGCCCGCCGCAaAGaCGAucgaacGCUGGAc-- -3'
miRNA:   3'- -UGGGCGGCGUaUCcGCU------CGACCUucg -5'
23033 5' -58.7 NC_005178.1 + 1736 0.66 0.406169
Target:  5'- uGCUCGCCGaacUGGGCcgccuuGAGCggacccgcgaGGAAGCg -3'
miRNA:   3'- -UGGGCGGCgu-AUCCG------CUCGa---------CCUUCG- -5'
23033 5' -58.7 NC_005178.1 + 2730 0.68 0.30398
Target:  5'- --aCGCCGCccUGGGCGAGgUGGccaccaAGGCg -3'
miRNA:   3'- uggGCGGCGu-AUCCGCUCgACC------UUCG- -5'
23033 5' -58.7 NC_005178.1 + 4340 0.66 0.393184
Target:  5'- uACCCGCCGUcacgcucggcgcgaAUcucgucgAGGUGAGCcaGGgcGCg -3'
miRNA:   3'- -UGGGCGGCG--------------UA-------UCCGCUCGa-CCuuCG- -5'
23033 5' -58.7 NC_005178.1 + 4481 0.74 0.118004
Target:  5'- uCCCGCCcagcgcuaccgGCAgUGGuGCGAGCUGGccGAGCg -3'
miRNA:   3'- uGGGCGG-----------CGU-AUC-CGCUCGACC--UUCG- -5'
23033 5' -58.7 NC_005178.1 + 5540 0.68 0.289
Target:  5'- cGCCUGCCuGCGccUGGGCG-GCUacgucGAGGCg -3'
miRNA:   3'- -UGGGCGG-CGU--AUCCGCuCGAc----CUUCG- -5'
23033 5' -58.7 NC_005178.1 + 7146 0.68 0.319551
Target:  5'- cCCCGUCGCGau-GCGcuGCUGGaAAGCg -3'
miRNA:   3'- uGGGCGGCGUaucCGCu-CGACC-UUCG- -5'
23033 5' -58.7 NC_005178.1 + 7484 0.74 0.111472
Target:  5'- -gCUGCCgGCcgAGGCGucgcGCUGGAAGCc -3'
miRNA:   3'- ugGGCGG-CGuaUCCGCu---CGACCUUCG- -5'
23033 5' -58.7 NC_005178.1 + 10092 0.7 0.241136
Target:  5'- gGCCCGgCGCAUguuccAGGuCGAGCgGGucGAGUg -3'
miRNA:   3'- -UGGGCgGCGUA-----UCC-GCUCGaCC--UUCG- -5'
23033 5' -58.7 NC_005178.1 + 10352 0.67 0.335712
Target:  5'- cGCCgGgCUGCGcuGGcCGAGCUGGuGGGCa -3'
miRNA:   3'- -UGGgC-GGCGUauCC-GCUCGACC-UUCG- -5'
23033 5' -58.7 NC_005178.1 + 10806 0.69 0.25944
Target:  5'- aGCCCaGCCGCGa--GCGucguaacgcucuGCUGGAAGCc -3'
miRNA:   3'- -UGGG-CGGCGUaucCGCu-----------CGACCUUCG- -5'
23033 5' -58.7 NC_005178.1 + 12913 0.7 0.241136
Target:  5'- uGCUgGCCGgu--GGUGGGCUGGAGGa -3'
miRNA:   3'- -UGGgCGGCguauCCGCUCGACCUUCg -5'
23033 5' -58.7 NC_005178.1 + 13017 0.74 0.118004
Target:  5'- aGCCCGCCGUgaAGGUGcAGCUGcuGGCc -3'
miRNA:   3'- -UGGGCGGCGuaUCCGC-UCGACcuUCG- -5'
23033 5' -58.7 NC_005178.1 + 13472 0.67 0.361055
Target:  5'- cACCCGCuucCGUcu-GGUgGAGCUGGuAGCg -3'
miRNA:   3'- -UGGGCG---GCGuauCCG-CUCGACCuUCG- -5'
23033 5' -58.7 NC_005178.1 + 13606 1.1 0.000211
Target:  5'- gACCCGCCGCAUAGGCGAGCUGGAAGCc -3'
miRNA:   3'- -UGGGCGGCGUAUCCGCUCGACCUUCG- -5'
23033 5' -58.7 NC_005178.1 + 15405 0.67 0.369794
Target:  5'- -gUgGCCGCAUGGGCGGcGaCUGGuAGGa -3'
miRNA:   3'- ugGgCGGCGUAUCCGCU-C-GACC-UUCg -5'
23033 5' -58.7 NC_005178.1 + 16443 0.69 0.256757
Target:  5'- gACCUGCCccaggGCGUAGGCGccgccgcccgacucGCUGGucuGGCu -3'
miRNA:   3'- -UGGGCGG-----CGUAUCCGCu-------------CGACCu--UCG- -5'
23033 5' -58.7 NC_005178.1 + 16512 0.68 0.311692
Target:  5'- -aUCGCgacucaGCGUGgcGGCGAGCUGGcGGGCa -3'
miRNA:   3'- ugGGCGg-----CGUAU--CCGCUCGACC-UUCG- -5'
23033 5' -58.7 NC_005178.1 + 17855 0.68 0.322735
Target:  5'- cGCCUGCCGCccucGGCGAGguccaggacgugcucCUGGAcccgguacgccAGCg -3'
miRNA:   3'- -UGGGCGGCGuau-CCGCUC---------------GACCU-----------UCG- -5'
23033 5' -58.7 NC_005178.1 + 18090 0.68 0.279577
Target:  5'- aACCUGCCGCAgcgccuGGCccAGCccgccauggugcugUGGGAGCg -3'
miRNA:   3'- -UGGGCGGCGUau----CCGc-UCG--------------ACCUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.