Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23033 | 5' | -58.7 | NC_005178.1 | + | 26193 | 0.66 | 0.378677 |
Target: 5'- -gCCGCUGC--GGGCGuggcGCUGGcucuGGCg -3' miRNA: 3'- ugGGCGGCGuaUCCGCu---CGACCu---UCG- -5' |
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23033 | 5' | -58.7 | NC_005178.1 | + | 5540 | 0.68 | 0.289 |
Target: 5'- cGCCUGCCuGCGccUGGGCG-GCUacgucGAGGCg -3' miRNA: 3'- -UGGGCGG-CGU--AUCCGCuCGAc----CUUCG- -5' |
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23033 | 5' | -58.7 | NC_005178.1 | + | 2730 | 0.68 | 0.30398 |
Target: 5'- --aCGCCGCccUGGGCGAGgUGGccaccaAGGCg -3' miRNA: 3'- uggGCGGCGu-AUCCGCUCgACC------UUCG- -5' |
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23033 | 5' | -58.7 | NC_005178.1 | + | 7146 | 0.68 | 0.319551 |
Target: 5'- cCCCGUCGCGau-GCGcuGCUGGaAAGCg -3' miRNA: 3'- uGGGCGGCGUaucCGCu-CGACC-UUCG- -5' |
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23033 | 5' | -58.7 | NC_005178.1 | + | 17855 | 0.68 | 0.322735 |
Target: 5'- cGCCUGCCGCccucGGCGAGguccaggacgugcucCUGGAcccgguacgccAGCg -3' miRNA: 3'- -UGGGCGGCGuau-CCGCUC---------------GACCU-----------UCG- -5' |
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23033 | 5' | -58.7 | NC_005178.1 | + | 10352 | 0.67 | 0.335712 |
Target: 5'- cGCCgGgCUGCGcuGGcCGAGCUGGuGGGCa -3' miRNA: 3'- -UGGgC-GGCGUauCC-GCUCGACC-UUCG- -5' |
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23033 | 5' | -58.7 | NC_005178.1 | + | 36413 | 0.67 | 0.361055 |
Target: 5'- uCUCGCCGUGgaacgGGGCGAcgauuacggacgGCgGGAAGUa -3' miRNA: 3'- uGGGCGGCGUa----UCCGCU------------CGaCCUUCG- -5' |
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23033 | 5' | -58.7 | NC_005178.1 | + | 13472 | 0.67 | 0.361055 |
Target: 5'- cACCCGCuucCGUcu-GGUgGAGCUGGuAGCg -3' miRNA: 3'- -UGGGCG---GCGuauCCG-CUCGACCuUCG- -5' |
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23033 | 5' | -58.7 | NC_005178.1 | + | 15405 | 0.67 | 0.369794 |
Target: 5'- -gUgGCCGCAUGGGCGGcGaCUGGuAGGa -3' miRNA: 3'- ugGgCGGCGUAUCCGCU-C-GACC-UUCg -5' |
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23033 | 5' | -58.7 | NC_005178.1 | + | 23482 | 0.68 | 0.281729 |
Target: 5'- gGCCCGCUGCuc-GGCcGGCUGcucaAGGCa -3' miRNA: 3'- -UGGGCGGCGuauCCGcUCGACc---UUCG- -5' |
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23033 | 5' | -58.7 | NC_005178.1 | + | 18090 | 0.68 | 0.279577 |
Target: 5'- aACCUGCCGCAgcgccuGGCccAGCccgccauggugcugUGGGAGCg -3' miRNA: 3'- -UGGGCGGCGUau----CCGc-UCG--------------ACCUUCG- -5' |
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23033 | 5' | -58.7 | NC_005178.1 | + | 22276 | 0.69 | 0.267625 |
Target: 5'- gGCCCGCCagGC---GGCGGGCgauGAAGCc -3' miRNA: 3'- -UGGGCGG--CGuauCCGCUCGac-CUUCG- -5' |
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23033 | 5' | -58.7 | NC_005178.1 | + | 4481 | 0.74 | 0.118004 |
Target: 5'- uCCCGCCcagcgcuaccgGCAgUGGuGCGAGCUGGccGAGCg -3' miRNA: 3'- uGGGCGG-----------CGU-AUC-CGCUCGACC--UUCG- -5' |
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23033 | 5' | -58.7 | NC_005178.1 | + | 13017 | 0.74 | 0.118004 |
Target: 5'- aGCCCGCCGUgaAGGUGcAGCUGcuGGCc -3' miRNA: 3'- -UGGGCGGCGuaUCCGC-UCGACcuUCG- -5' |
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23033 | 5' | -58.7 | NC_005178.1 | + | 32170 | 0.71 | 0.204985 |
Target: 5'- -aCCGCCGCAUccucaccAGcacCGAGCUGGAcGCc -3' miRNA: 3'- ugGGCGGCGUA-------UCc--GCUCGACCUuCG- -5' |
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23033 | 5' | -58.7 | NC_005178.1 | + | 20588 | 0.71 | 0.205538 |
Target: 5'- uCUCGCCucaaCGgcGGCGAGCUGGAcGGCc -3' miRNA: 3'- uGGGCGGc---GUauCCGCUCGACCU-UCG- -5' |
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23033 | 5' | -58.7 | NC_005178.1 | + | 12913 | 0.7 | 0.241136 |
Target: 5'- uGCUgGCCGgu--GGUGGGCUGGAGGa -3' miRNA: 3'- -UGGgCGGCguauCCGCUCGACCUUCg -5' |
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23033 | 5' | -58.7 | NC_005178.1 | + | 10092 | 0.7 | 0.241136 |
Target: 5'- gGCCCGgCGCAUguuccAGGuCGAGCgGGucGAGUg -3' miRNA: 3'- -UGGGCgGCGUA-----UCC-GCUCGaCC--UUCG- -5' |
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23033 | 5' | -58.7 | NC_005178.1 | + | 1392 | 0.69 | 0.247546 |
Target: 5'- gGCCCGCCGCAaAGaCGAucgaacGCUGGAc-- -3' miRNA: 3'- -UGGGCGGCGUaUCcGCU------CGACCUucg -5' |
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23033 | 5' | -58.7 | NC_005178.1 | + | 10806 | 0.69 | 0.25944 |
Target: 5'- aGCCCaGCCGCGa--GCGucguaacgcucuGCUGGAAGCc -3' miRNA: 3'- -UGGG-CGGCGUaucCGCu-----------CGACCUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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