miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23033 5' -58.7 NC_005178.1 + 37178 0.66 0.387701
Target:  5'- gACCCGCUGCGccuggAGGCcGAGUUuGAcGCc -3'
miRNA:   3'- -UGGGCGGCGUa----UCCG-CUCGAcCUuCG- -5'
23033 5' -58.7 NC_005178.1 + 36413 0.67 0.361055
Target:  5'- uCUCGCCGUGgaacgGGGCGAcgauuacggacgGCgGGAAGUa -3'
miRNA:   3'- uGGGCGGCGUa----UCCGCU------------CGaCCUUCG- -5'
23033 5' -58.7 NC_005178.1 + 36066 0.66 0.429046
Target:  5'- gGCCCGCUG-GUGGGCaacGGGUgcgaccacggcuaucUGGGAGUa -3'
miRNA:   3'- -UGGGCGGCgUAUCCG---CUCG---------------ACCUUCG- -5'
23033 5' -58.7 NC_005178.1 + 34164 0.82 0.030703
Target:  5'- gGCCCGCaCGCGaauggacgAGGCGAGCUGGcGGGCc -3'
miRNA:   3'- -UGGGCG-GCGUa-------UCCGCUCGACC-UUCG- -5'
23033 5' -58.7 NC_005178.1 + 33900 0.66 0.378677
Target:  5'- uCCUGCCGCGccuggcGGCGAuGCUcGGcGGCc -3'
miRNA:   3'- uGGGCGGCGUau----CCGCU-CGA-CCuUCG- -5'
23033 5' -58.7 NC_005178.1 + 32170 0.71 0.204985
Target:  5'- -aCCGCCGCAUccucaccAGcacCGAGCUGGAcGCc -3'
miRNA:   3'- ugGGCGGCGUA-------UCc--GCUCGACCUuCG- -5'
23033 5' -58.7 NC_005178.1 + 28191 0.66 0.396866
Target:  5'- -gCCGgCGCccuGGCGAcuGCUGGcGGCa -3'
miRNA:   3'- ugGGCgGCGuauCCGCU--CGACCuUCG- -5'
23033 5' -58.7 NC_005178.1 + 27936 0.68 0.281729
Target:  5'- gACCCaGuuGCccUGGGCGGcCUGGAGGUc -3'
miRNA:   3'- -UGGG-CggCGu-AUCCGCUcGACCUUCG- -5'
23033 5' -58.7 NC_005178.1 + 27658 0.66 0.378677
Target:  5'- -gCCGCCGCugccGUGGGCaUGGgcGCg -3'
miRNA:   3'- ugGGCGGCGuaucCGCUCG-ACCuuCG- -5'
23033 5' -58.7 NC_005178.1 + 26193 0.66 0.378677
Target:  5'- -gCCGCUGC--GGGCGuggcGCUGGcucuGGCg -3'
miRNA:   3'- ugGGCGGCGuaUCCGCu---CGACCu---UCG- -5'
23033 5' -58.7 NC_005178.1 + 25798 0.68 0.289
Target:  5'- gACCCcugGCaGCAUucAGGCGcGcCUGGAGGCu -3'
miRNA:   3'- -UGGG---CGgCGUA--UCCGCuC-GACCUUCG- -5'
23033 5' -58.7 NC_005178.1 + 25147 0.69 0.26079
Target:  5'- cGCUCGgUGUAgcGGcCGAGCUGGucGCg -3'
miRNA:   3'- -UGGGCgGCGUauCC-GCUCGACCuuCG- -5'
23033 5' -58.7 NC_005178.1 + 24813 0.68 0.296416
Target:  5'- gGCCUugaggGCCGCGUgguGGGUGAGCUGcucuucGAAGg -3'
miRNA:   3'- -UGGG-----CGGCGUA---UCCGCUCGAC------CUUCg -5'
23033 5' -58.7 NC_005178.1 + 23746 0.66 0.415608
Target:  5'- gGCuuGCCgGCAUGGGUGuGaUUGGGuuucucGGCg -3'
miRNA:   3'- -UGggCGG-CGUAUCCGCuC-GACCU------UCG- -5'
23033 5' -58.7 NC_005178.1 + 23482 0.68 0.281729
Target:  5'- gGCCCGCUGCuc-GGCcGGCUGcucaAGGCa -3'
miRNA:   3'- -UGGGCGGCGuauCCGcUCGACc---UUCG- -5'
23033 5' -58.7 NC_005178.1 + 22332 0.74 0.108334
Target:  5'- cGCCCGCCGCcu-GGCGGGCcagccUGGcGGUc -3'
miRNA:   3'- -UGGGCGGCGuauCCGCUCG-----ACCuUCG- -5'
23033 5' -58.7 NC_005178.1 + 22276 0.69 0.267625
Target:  5'- gGCCCGCCagGC---GGCGGGCgauGAAGCc -3'
miRNA:   3'- -UGGGCGG--CGuauCCGCUCGac-CUUCG- -5'
23033 5' -58.7 NC_005178.1 + 20647 0.7 0.222732
Target:  5'- cACUCGCCGCcguugAGGCGAGa-GGucAGCg -3'
miRNA:   3'- -UGGGCGGCGua---UCCGCUCgaCCu-UCG- -5'
23033 5' -58.7 NC_005178.1 + 20588 0.71 0.205538
Target:  5'- uCUCGCCucaaCGgcGGCGAGCUGGAcGGCc -3'
miRNA:   3'- uGGGCGGc---GUauCCGCUCGACCU-UCG- -5'
23033 5' -58.7 NC_005178.1 + 20222 0.67 0.369794
Target:  5'- gACCgUGCCGuCcgGGGCGuAGCUGaagacGggGCu -3'
miRNA:   3'- -UGG-GCGGC-GuaUCCGC-UCGAC-----CuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.