miRNA display CGI


Results 41 - 60 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23034 3' -58.1 NC_005178.1 + 21236 0.66 0.447475
Target:  5'- cGGCCGGcCGCaUCAUCGGCgucgaacCGGacgGCg -3'
miRNA:   3'- -CCGGCUcGCGaAGUGGUCGa------GCCa--CG- -5'
23034 3' -58.1 NC_005178.1 + 22107 0.67 0.408972
Target:  5'- gGGCUGgaAGaugaacgGUUUUACCGGCUUGGUGg -3'
miRNA:   3'- -CCGGC--UCg------CGAAGUGGUCGAGCCACg -5'
23034 3' -58.1 NC_005178.1 + 22694 0.75 0.110026
Target:  5'- aGGCCGAGCuGgaUCGCCGGgUCGcUGCc -3'
miRNA:   3'- -CCGGCUCG-CgaAGUGGUCgAGCcACG- -5'
23034 3' -58.1 NC_005178.1 + 23228 0.67 0.372603
Target:  5'- uGGUCGAGCGCauccgCGCCGa---GGUGCc -3'
miRNA:   3'- -CCGGCUCGCGaa---GUGGUcgagCCACG- -5'
23034 3' -58.1 NC_005178.1 + 23535 0.71 0.219318
Target:  5'- cGGCCGAGCaGCgg-GCCGGCUucgcgcCGG-GCg -3'
miRNA:   3'- -CCGGCUCG-CGaagUGGUCGA------GCCaCG- -5'
23034 3' -58.1 NC_005178.1 + 24445 0.68 0.335213
Target:  5'- cGGCUGcGGCGCggugaacaugccCACCuGCUUGGUGg -3'
miRNA:   3'- -CCGGC-UCGCGaa----------GUGGuCGAGCCACg -5'
23034 3' -58.1 NC_005178.1 + 24647 0.72 0.197058
Target:  5'- cGGCCGaAGCGCccaggUCGCCGGUaucCGGcuUGCu -3'
miRNA:   3'- -CCGGC-UCGCGa----AGUGGUCGa--GCC--ACG- -5'
23034 3' -58.1 NC_005178.1 + 25575 0.67 0.418404
Target:  5'- cGCCGAGCGCgccCGCgaaCAGCa-GGUuGCa -3'
miRNA:   3'- cCGGCUCGCGaa-GUG---GUCGagCCA-CG- -5'
23034 3' -58.1 NC_005178.1 + 25729 0.7 0.27027
Target:  5'- uGGCCgcGAGCaGUUUgC-CCAGCUCGGccUGCu -3'
miRNA:   3'- -CCGG--CUCG-CGAA-GuGGUCGAGCC--ACG- -5'
23034 3' -58.1 NC_005178.1 + 26191 0.67 0.399673
Target:  5'- uGGCCGcugcgGGCGUggCGCUGGCUCuGGcGUa -3'
miRNA:   3'- -CCGGC-----UCGCGaaGUGGUCGAG-CCaCG- -5'
23034 3' -58.1 NC_005178.1 + 27366 0.71 0.219318
Target:  5'- aGGCCGGcGCGCUgcugCGCCuggagcuucuGCUCGGcGUu -3'
miRNA:   3'- -CCGGCU-CGCGAa---GUGGu---------CGAGCCaCG- -5'
23034 3' -58.1 NC_005178.1 + 27513 0.66 0.477634
Target:  5'- aGGCUGAuGCGCUggGCC-GCcgUGGUGg -3'
miRNA:   3'- -CCGGCU-CGCGAagUGGuCGa-GCCACg -5'
23034 3' -58.1 NC_005178.1 + 28474 0.66 0.457413
Target:  5'- aGGCCG-GUauGCUgUCGCUGG-UCGGUGUg -3'
miRNA:   3'- -CCGGCuCG--CGA-AGUGGUCgAGCCACG- -5'
23034 3' -58.1 NC_005178.1 + 28852 0.68 0.363861
Target:  5'- uGGUCGAGCGCcUCGuCCAGUUCcucaccGCg -3'
miRNA:   3'- -CCGGCUCGCGaAGU-GGUCGAGcca---CG- -5'
23034 3' -58.1 NC_005178.1 + 29420 0.67 0.381487
Target:  5'- cGCCGGGCGCU-----GGCUCGGUu- -3'
miRNA:   3'- cCGGCUCGCGAaguggUCGAGCCAcg -5'
23034 3' -58.1 NC_005178.1 + 29963 0.7 0.243689
Target:  5'- cGGCCuGGCGUggaaCGCgCAGCccggcaacUCGGUGCa -3'
miRNA:   3'- -CCGGcUCGCGaa--GUG-GUCG--------AGCCACG- -5'
23034 3' -58.1 NC_005178.1 + 32134 0.67 0.403377
Target:  5'- aGCCGAuauugcgcacauccaGCGCggUCGCCAGUUgcgagaCGGUGg -3'
miRNA:   3'- cCGGCU---------------CGCGa-AGUGGUCGA------GCCACg -5'
23034 3' -58.1 NC_005178.1 + 32260 0.72 0.19181
Target:  5'- uGGCCaaaCGCUcggugUCGgcguCCAGCUCGGUGCu -3'
miRNA:   3'- -CCGGcucGCGA-----AGU----GGUCGAGCCACG- -5'
23034 3' -58.1 NC_005178.1 + 33342 0.69 0.291703
Target:  5'- cGGUCGGcuuGgGCUUCugCGGCUuCGGcGCc -3'
miRNA:   3'- -CCGGCU---CgCGAAGugGUCGA-GCCaCG- -5'
23034 3' -58.1 NC_005178.1 + 33656 0.68 0.354409
Target:  5'- aGCgCGAGCGCgUCGCCGGUcgcgaccagcacgUCGGcucgaUGCc -3'
miRNA:   3'- cCG-GCUCGCGaAGUGGUCG-------------AGCC-----ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.