Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23034 | 3' | -58.1 | NC_005178.1 | + | 10430 | 0.67 | 0.418404 |
Target: 5'- -cUCGAuGuCGCUgccCACCAGCUCGGccaGCg -3' miRNA: 3'- ccGGCU-C-GCGAa--GUGGUCGAGCCa--CG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 10480 | 0.68 | 0.330332 |
Target: 5'- cGUCGAGCGCUUCGaacagGGCUUGcGUGa -3' miRNA: 3'- cCGGCUCGCGAAGUgg---UCGAGC-CACg -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 10592 | 0.66 | 0.427968 |
Target: 5'- cGGCCGAGCGa---GCCGGCacCGcaGCa -3' miRNA: 3'- -CCGGCUCGCgaagUGGUCGa-GCcaCG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 10713 | 0.69 | 0.299136 |
Target: 5'- gGGUCG-GCGCggagaCGCCGGC-CGGgGCg -3' miRNA: 3'- -CCGGCuCGCGaa---GUGGUCGaGCCaCG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 11449 | 0.68 | 0.355261 |
Target: 5'- uGGCUGGGCGCgUUCGCuCAGUg-GGUaaaacGCa -3' miRNA: 3'- -CCGGCUCGCG-AAGUG-GUCGagCCA-----CG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 12359 | 0.66 | 0.437659 |
Target: 5'- cGGCagGcAGCGCgaUCACCAGCgguuUCGGccaggGCa -3' miRNA: 3'- -CCGg-C-UCGCGa-AGUGGUCG----AGCCa----CG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 13185 | 0.66 | 0.467467 |
Target: 5'- uGGCCaGGCGCUggagCACCuccauagCGGUGg -3' miRNA: 3'- -CCGGcUCGCGAa---GUGGucga---GCCACg -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 14066 | 0.76 | 0.092701 |
Target: 5'- uGGCCGuccgGGUGgUcCACCAGCUCGG-GCa -3' miRNA: 3'- -CCGGC----UCGCgAaGUGGUCGAGCCaCG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 15150 | 1.14 | 0.000145 |
Target: 5'- uGGCCGAGCGCUUCACCAGCUCGGUGCg -3' miRNA: 3'- -CCGGCUCGCGAAGUGGUCGAGCCACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 15778 | 0.69 | 0.314442 |
Target: 5'- cGGCCGAgGCGUUgcgCGgCGGCUCGaUGg -3' miRNA: 3'- -CCGGCU-CGCGAa--GUgGUCGAGCcACg -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 16070 | 0.66 | 0.467467 |
Target: 5'- -cCCGAGCGCga-ACgCGGCUU-GUGCa -3' miRNA: 3'- ccGGCUCGCGaagUG-GUCGAGcCACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 16256 | 0.7 | 0.263413 |
Target: 5'- uGGCCGAG-GCcggUCACC-GCUCGcaGCa -3' miRNA: 3'- -CCGGCUCgCGa--AGUGGuCGAGCcaCG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 16282 | 0.68 | 0.338497 |
Target: 5'- cGGCCGAGcCGUUcaUgGCCAugaugcGCU-GGUGCg -3' miRNA: 3'- -CCGGCUC-GCGA--AgUGGU------CGAgCCACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 16891 | 0.66 | 0.457413 |
Target: 5'- aGGCCGAGCuGCUcggCGCCcuGGC-CGaG-GCa -3' miRNA: 3'- -CCGGCUCG-CGAa--GUGG--UCGaGC-CaCG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 16953 | 0.68 | 0.363861 |
Target: 5'- cGGCCaGGGCGCcg-AgCAGCUCGGccucGCu -3' miRNA: 3'- -CCGG-CUCGCGaagUgGUCGAGCCa---CG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 17333 | 0.7 | 0.263413 |
Target: 5'- gGGCCGAG-GUcgC-CCAGCUCGGcaGCc -3' miRNA: 3'- -CCGGCUCgCGaaGuGGUCGAGCCa-CG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 17834 | 0.66 | 0.444518 |
Target: 5'- aGGCCGAGCGCacccugggagCGCCuGCcgcccUCGGcgagguccaggacgUGCu -3' miRNA: 3'- -CCGGCUCGCGaa--------GUGGuCG-----AGCC--------------ACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 18148 | 0.71 | 0.230624 |
Target: 5'- gGGCCaGGCGCUgcggcagguUCGCCAGCUgcucgcgagcgacCGG-GCu -3' miRNA: 3'- -CCGGcUCGCGA---------AGUGGUCGA-------------GCCaCG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 20485 | 0.78 | 0.069444 |
Target: 5'- aGGCCGAGgGUUUCGCgCAGCUUGGccagGUu -3' miRNA: 3'- -CCGGCUCgCGAAGUG-GUCGAGCCa---CG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 20581 | 0.66 | 0.447475 |
Target: 5'- --aCGGGCGCccacUUCGCCGGgUCGGgGUu -3' miRNA: 3'- ccgGCUCGCG----AAGUGGUCgAGCCaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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