miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23034 3' -58.1 NC_005178.1 + 24647 0.72 0.197058
Target:  5'- cGGCCGaAGCGCccaggUCGCCGGUaucCGGcuUGCu -3'
miRNA:   3'- -CCGGC-UCGCGa----AGUGGUCGa--GCC--ACG- -5'
23034 3' -58.1 NC_005178.1 + 24445 0.68 0.335213
Target:  5'- cGGCUGcGGCGCggugaacaugccCACCuGCUUGGUGg -3'
miRNA:   3'- -CCGGC-UCGCGaa----------GUGGuCGAGCCACg -5'
23034 3' -58.1 NC_005178.1 + 23535 0.71 0.219318
Target:  5'- cGGCCGAGCaGCgg-GCCGGCUucgcgcCGG-GCg -3'
miRNA:   3'- -CCGGCUCG-CGaagUGGUCGA------GCCaCG- -5'
23034 3' -58.1 NC_005178.1 + 23228 0.67 0.372603
Target:  5'- uGGUCGAGCGCauccgCGCCGa---GGUGCc -3'
miRNA:   3'- -CCGGCUCGCGaa---GUGGUcgagCCACG- -5'
23034 3' -58.1 NC_005178.1 + 22694 0.75 0.110026
Target:  5'- aGGCCGAGCuGgaUCGCCGGgUCGcUGCc -3'
miRNA:   3'- -CCGGCUCG-CgaAGUGGUCgAGCcACG- -5'
23034 3' -58.1 NC_005178.1 + 22107 0.67 0.408972
Target:  5'- gGGCUGgaAGaugaacgGUUUUACCGGCUUGGUGg -3'
miRNA:   3'- -CCGGC--UCg------CGAAGUGGUCGAGCCACg -5'
23034 3' -58.1 NC_005178.1 + 21236 0.66 0.447475
Target:  5'- cGGCCGGcCGCaUCAUCGGCgucgaacCGGacgGCg -3'
miRNA:   3'- -CCGGCUcGCGaAGUGGUCGa------GCCa--CG- -5'
23034 3' -58.1 NC_005178.1 + 20581 0.66 0.447475
Target:  5'- --aCGGGCGCccacUUCGCCGGgUCGGgGUu -3'
miRNA:   3'- ccgGCUCGCG----AAGUGGUCgAGCCaCG- -5'
23034 3' -58.1 NC_005178.1 + 20485 0.78 0.069444
Target:  5'- aGGCCGAGgGUUUCGCgCAGCUUGGccagGUu -3'
miRNA:   3'- -CCGGCUCgCGAAGUG-GUCGAGCCa---CG- -5'
23034 3' -58.1 NC_005178.1 + 18148 0.71 0.230624
Target:  5'- gGGCCaGGCGCUgcggcagguUCGCCAGCUgcucgcgagcgacCGG-GCu -3'
miRNA:   3'- -CCGGcUCGCGA---------AGUGGUCGA-------------GCCaCG- -5'
23034 3' -58.1 NC_005178.1 + 17834 0.66 0.444518
Target:  5'- aGGCCGAGCGCacccugggagCGCCuGCcgcccUCGGcgagguccaggacgUGCu -3'
miRNA:   3'- -CCGGCUCGCGaa--------GUGGuCG-----AGCC--------------ACG- -5'
23034 3' -58.1 NC_005178.1 + 17333 0.7 0.263413
Target:  5'- gGGCCGAG-GUcgC-CCAGCUCGGcaGCc -3'
miRNA:   3'- -CCGGCUCgCGaaGuGGUCGAGCCa-CG- -5'
23034 3' -58.1 NC_005178.1 + 16953 0.68 0.363861
Target:  5'- cGGCCaGGGCGCcg-AgCAGCUCGGccucGCu -3'
miRNA:   3'- -CCGG-CUCGCGaagUgGUCGAGCCa---CG- -5'
23034 3' -58.1 NC_005178.1 + 16891 0.66 0.457413
Target:  5'- aGGCCGAGCuGCUcggCGCCcuGGC-CGaG-GCa -3'
miRNA:   3'- -CCGGCUCG-CGAa--GUGG--UCGaGC-CaCG- -5'
23034 3' -58.1 NC_005178.1 + 16282 0.68 0.338497
Target:  5'- cGGCCGAGcCGUUcaUgGCCAugaugcGCU-GGUGCg -3'
miRNA:   3'- -CCGGCUC-GCGA--AgUGGU------CGAgCCACG- -5'
23034 3' -58.1 NC_005178.1 + 16256 0.7 0.263413
Target:  5'- uGGCCGAG-GCcggUCACC-GCUCGcaGCa -3'
miRNA:   3'- -CCGGCUCgCGa--AGUGGuCGAGCcaCG- -5'
23034 3' -58.1 NC_005178.1 + 16070 0.66 0.467467
Target:  5'- -cCCGAGCGCga-ACgCGGCUU-GUGCa -3'
miRNA:   3'- ccGGCUCGCGaagUG-GUCGAGcCACG- -5'
23034 3' -58.1 NC_005178.1 + 15778 0.69 0.314442
Target:  5'- cGGCCGAgGCGUUgcgCGgCGGCUCGaUGg -3'
miRNA:   3'- -CCGGCU-CGCGAa--GUgGUCGAGCcACg -5'
23034 3' -58.1 NC_005178.1 + 15150 1.14 0.000145
Target:  5'- uGGCCGAGCGCUUCACCAGCUCGGUGCg -3'
miRNA:   3'- -CCGGCUCGCGAAGUGGUCGAGCCACG- -5'
23034 3' -58.1 NC_005178.1 + 14066 0.76 0.092701
Target:  5'- uGGCCGuccgGGUGgUcCACCAGCUCGG-GCa -3'
miRNA:   3'- -CCGGC----UCGCgAaGUGGUCGAGCCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.