Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23034 | 3' | -58.1 | NC_005178.1 | + | 4093 | 0.69 | 0.296146 |
Target: 5'- uGGCCGuGgGCUacgacauccacgaCGCCAGCagGGUGUg -3' miRNA: 3'- -CCGGCuCgCGAa------------GUGGUCGagCCACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 9661 | 0.69 | 0.306716 |
Target: 5'- cGGCCG-GUgGCUUCGCCgAGC-CGGccgagGCg -3' miRNA: 3'- -CCGGCuCG-CGAAGUGG-UCGaGCCa----CG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 10480 | 0.68 | 0.330332 |
Target: 5'- cGUCGAGCGCUUCGaacagGGCUUGcGUGa -3' miRNA: 3'- cCGGCUCGCGAAGUgg---UCGAGC-CACg -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 16282 | 0.68 | 0.338497 |
Target: 5'- cGGCCGAGcCGUUcaUgGCCAugaugcGCU-GGUGCg -3' miRNA: 3'- -CCGGCUC-GCGA--AgUGGU------CGAgCCACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 11449 | 0.68 | 0.355261 |
Target: 5'- uGGCUGGGCGCgUUCGCuCAGUg-GGUaaaacGCa -3' miRNA: 3'- -CCGGCUCGCG-AAGUG-GUCGagCCA-----CG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 6540 | 0.68 | 0.330332 |
Target: 5'- uGGCCGAacugGC-UCACCAGCUCcggcaaGGUGg -3' miRNA: 3'- -CCGGCUcg--CGaAGUGGUCGAG------CCACg -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 24445 | 0.68 | 0.335213 |
Target: 5'- cGGCUGcGGCGCggugaacaugccCACCuGCUUGGUGg -3' miRNA: 3'- -CCGGC-UCGCGaa----------GUGGuCGAGCCACg -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 33656 | 0.68 | 0.354409 |
Target: 5'- aGCgCGAGCGCgUCGCCGGUcgcgaccagcacgUCGGcucgaUGCc -3' miRNA: 3'- cCG-GCUCGCGaAGUGGUCG-------------AGCC-----ACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 16953 | 0.68 | 0.363861 |
Target: 5'- cGGCCaGGGCGCcg-AgCAGCUCGGccucGCu -3' miRNA: 3'- -CCGG-CUCGCGaagUgGUCGAGCCa---CG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 7793 | 0.68 | 0.363861 |
Target: 5'- cGCCaGGCGCUUCuucaggucuucgGCCGGCuccgaauagcgcUCGGUGa -3' miRNA: 3'- cCGGcUCGCGAAG------------UGGUCG------------AGCCACg -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 34910 | 0.67 | 0.381487 |
Target: 5'- cGGUCGGGCGgaau-CCAGCcCGGUGg -3' miRNA: 3'- -CCGGCUCGCgaaguGGUCGaGCCACg -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 8874 | 0.67 | 0.381487 |
Target: 5'- cGCCGGGCGaCUUUcuuGCCGaCcUGGUGCg -3' miRNA: 3'- cCGGCUCGC-GAAG---UGGUcGaGCCACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 2933 | 0.67 | 0.390511 |
Target: 5'- gGGUaaugGAGCGUUUCcgGCUguAGC-CGGUGCg -3' miRNA: 3'- -CCGg---CUCGCGAAG--UGG--UCGaGCCACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 32134 | 0.67 | 0.403377 |
Target: 5'- aGCCGAuauugcgcacauccaGCGCggUCGCCAGUUgcgagaCGGUGg -3' miRNA: 3'- cCGGCU---------------CGCGa-AGUGGUCGA------GCCACg -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 22107 | 0.67 | 0.408972 |
Target: 5'- gGGCUGgaAGaugaacgGUUUUACCGGCUUGGUGg -3' miRNA: 3'- -CCGGC--UCg------CGAAGUGGUCGAGCCACg -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 8570 | 0.67 | 0.408972 |
Target: 5'- -uCCG-GCGCUUCGCCGa--CGGUGUa -3' miRNA: 3'- ccGGCuCGCGAAGUGGUcgaGCCACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 10430 | 0.67 | 0.418404 |
Target: 5'- -cUCGAuGuCGCUgccCACCAGCUCGGccaGCg -3' miRNA: 3'- ccGGCU-C-GCGAa--GUGGUCGAGCCa--CG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 35172 | 0.66 | 0.437659 |
Target: 5'- cGGaCCGGcCGCcagCGgCAGCUCGGcgGCg -3' miRNA: 3'- -CC-GGCUcGCGaa-GUgGUCGAGCCa-CG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 12359 | 0.66 | 0.437659 |
Target: 5'- cGGCagGcAGCGCgaUCACCAGCgguuUCGGccaggGCa -3' miRNA: 3'- -CCGg-C-UCGCGa-AGUGGUCG----AGCCa----CG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 9944 | 0.66 | 0.447475 |
Target: 5'- uGGCCGAGCGCa-CGCCcGCgacgCGa-GCg -3' miRNA: 3'- -CCGGCUCGCGaaGUGGuCGa---GCcaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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