miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23034 3' -58.1 NC_005178.1 + 2933 0.67 0.390511
Target:  5'- gGGUaaugGAGCGUUUCcgGCUguAGC-CGGUGCg -3'
miRNA:   3'- -CCGg---CUCGCGAAG--UGG--UCGaGCCACG- -5'
23034 3' -58.1 NC_005178.1 + 8874 0.67 0.381487
Target:  5'- cGCCGGGCGaCUUUcuuGCCGaCcUGGUGCg -3'
miRNA:   3'- cCGGCUCGC-GAAG---UGGUcGaGCCACG- -5'
23034 3' -58.1 NC_005178.1 + 24445 0.68 0.335213
Target:  5'- cGGCUGcGGCGCggugaacaugccCACCuGCUUGGUGg -3'
miRNA:   3'- -CCGGC-UCGCGaa----------GUGGuCGAGCCACg -5'
23034 3' -58.1 NC_005178.1 + 15778 0.69 0.314442
Target:  5'- cGGCCGAgGCGUUgcgCGgCGGCUCGaUGg -3'
miRNA:   3'- -CCGGCU-CGCGAa--GUgGUCGAGCcACg -5'
23034 3' -58.1 NC_005178.1 + 28474 0.66 0.457413
Target:  5'- aGGCCG-GUauGCUgUCGCUGG-UCGGUGUg -3'
miRNA:   3'- -CCGGCuCG--CGA-AGUGGUCgAGCCACG- -5'
23034 3' -58.1 NC_005178.1 + 35172 0.66 0.437659
Target:  5'- cGGaCCGGcCGCcagCGgCAGCUCGGcgGCg -3'
miRNA:   3'- -CC-GGCUcGCGaa-GUgGUCGAGCCa-CG- -5'
23034 3' -58.1 NC_005178.1 + 7793 0.68 0.363861
Target:  5'- cGCCaGGCGCUUCuucaggucuucgGCCGGCuccgaauagcgcUCGGUGa -3'
miRNA:   3'- cCGGcUCGCGAAG------------UGGUCG------------AGCCACg -5'
23034 3' -58.1 NC_005178.1 + 10713 0.69 0.299136
Target:  5'- gGGUCG-GCGCggagaCGCCGGC-CGGgGCg -3'
miRNA:   3'- -CCGGCuCGCGaa---GUGGUCGaGCCaCG- -5'
23034 3' -58.1 NC_005178.1 + 10430 0.67 0.418404
Target:  5'- -cUCGAuGuCGCUgccCACCAGCUCGGccaGCg -3'
miRNA:   3'- ccGGCU-C-GCGAa--GUGGUCGAGCCa--CG- -5'
23034 3' -58.1 NC_005178.1 + 4574 0.69 0.299136
Target:  5'- aGGCCgGAGCGUUgccgcUCgGCCAGCUCGcaccacUGCc -3'
miRNA:   3'- -CCGG-CUCGCGA-----AG-UGGUCGAGCc-----ACG- -5'
23034 3' -58.1 NC_005178.1 + 34910 0.67 0.381487
Target:  5'- cGGUCGGGCGgaau-CCAGCcCGGUGg -3'
miRNA:   3'- -CCGGCUCGCgaaguGGUCGaGCCACg -5'
23034 3' -58.1 NC_005178.1 + 32134 0.67 0.403377
Target:  5'- aGCCGAuauugcgcacauccaGCGCggUCGCCAGUUgcgagaCGGUGg -3'
miRNA:   3'- cCGGCU---------------CGCGa-AGUGGUCGA------GCCACg -5'
23034 3' -58.1 NC_005178.1 + 16953 0.68 0.363861
Target:  5'- cGGCCaGGGCGCcg-AgCAGCUCGGccucGCu -3'
miRNA:   3'- -CCGG-CUCGCGaagUgGUCGAGCCa---CG- -5'
23034 3' -58.1 NC_005178.1 + 33656 0.68 0.354409
Target:  5'- aGCgCGAGCGCgUCGCCGGUcgcgaccagcacgUCGGcucgaUGCc -3'
miRNA:   3'- cCG-GCUCGCGaAGUGGUCG-------------AGCC-----ACG- -5'
23034 3' -58.1 NC_005178.1 + 6540 0.68 0.330332
Target:  5'- uGGCCGAacugGC-UCACCAGCUCcggcaaGGUGg -3'
miRNA:   3'- -CCGGCUcg--CGaAGUGGUCGAG------CCACg -5'
23034 3' -58.1 NC_005178.1 + 10341 0.69 0.322314
Target:  5'- cGCCGAGCuGCUcgacuacCACCAGCgUGGccgGCa -3'
miRNA:   3'- cCGGCUCG-CGAa------GUGGUCGaGCCa--CG- -5'
23034 3' -58.1 NC_005178.1 + 27513 0.66 0.477634
Target:  5'- aGGCUGAuGCGCUggGCC-GCcgUGGUGg -3'
miRNA:   3'- -CCGGCU-CGCGAagUGGuCGa-GCCACg -5'
23034 3' -58.1 NC_005178.1 + 13185 0.66 0.467467
Target:  5'- uGGCCaGGCGCUggagCACCuccauagCGGUGg -3'
miRNA:   3'- -CCGGcUCGCGAa---GUGGucga---GCCACg -5'
23034 3' -58.1 NC_005178.1 + 9723 0.66 0.456414
Target:  5'- cGGCCGgcucGGCGaagcCACCGGCcgcgcagaucagaUCGaGUGCa -3'
miRNA:   3'- -CCGGC----UCGCgaa-GUGGUCG-------------AGC-CACG- -5'
23034 3' -58.1 NC_005178.1 + 12359 0.66 0.437659
Target:  5'- cGGCagGcAGCGCgaUCACCAGCgguuUCGGccaggGCa -3'
miRNA:   3'- -CCGg-C-UCGCGa-AGUGGUCG----AGCCa----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.