miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23034 3' -58.1 NC_005178.1 + 25575 0.67 0.418404
Target:  5'- cGCCGAGCGCgccCGCgaaCAGCa-GGUuGCa -3'
miRNA:   3'- cCGGCUCGCGaa-GUG---GUCGagCCA-CG- -5'
23034 3' -58.1 NC_005178.1 + 23228 0.67 0.372603
Target:  5'- uGGUCGAGCGCauccgCGCCGa---GGUGCc -3'
miRNA:   3'- -CCGGCUCGCGaa---GUGGUcgagCCACG- -5'
23034 3' -58.1 NC_005178.1 + 751 0.67 0.418404
Target:  5'- uGCCGAcCuGCUUCGCCAauGCUCGccgGCu -3'
miRNA:   3'- cCGGCUcG-CGAAGUGGU--CGAGCca-CG- -5'
23034 3' -58.1 NC_005178.1 + 10327 0.67 0.408972
Target:  5'- gGGCCGGGCGCggaggggcgaagcgCGCCGgGCUgcgcuggccgagcUGGUGg -3'
miRNA:   3'- -CCGGCUCGCGaa------------GUGGU-CGA-------------GCCACg -5'
23034 3' -58.1 NC_005178.1 + 36371 0.67 0.372603
Target:  5'- cGCUGAuucuGCGCUUCACCGGgUCGuuuuccaGCa -3'
miRNA:   3'- cCGGCU----CGCGAAGUGGUCgAGCca-----CG- -5'
23034 3' -58.1 NC_005178.1 + 29420 0.67 0.381487
Target:  5'- cGCCGGGCGCU-----GGCUCGGUu- -3'
miRNA:   3'- cCGGCUCGCGAaguggUCGAGCCAcg -5'
23034 3' -58.1 NC_005178.1 + 26191 0.67 0.399673
Target:  5'- uGGCCGcugcgGGCGUggCGCUGGCUCuGGcGUa -3'
miRNA:   3'- -CCGGC-----UCGCGaaGUGGUCGAG-CCaCG- -5'
23034 3' -58.1 NC_005178.1 + 36535 0.67 0.390511
Target:  5'- cGGCCGAGCGgUagccUUGCCcGCUaCGGgGUg -3'
miRNA:   3'- -CCGGCUCGCgA----AGUGGuCGA-GCCaCG- -5'
23034 3' -58.1 NC_005178.1 + 28852 0.68 0.363861
Target:  5'- uGGUCGAGCGCcUCGuCCAGUUCcucaccGCg -3'
miRNA:   3'- -CCGGCUCGCGaAGU-GGUCGAGcca---CG- -5'
23034 3' -58.1 NC_005178.1 + 7793 0.68 0.363861
Target:  5'- cGCCaGGCGCUUCuucaggucuucgGCCGGCuccgaauagcgcUCGGUGa -3'
miRNA:   3'- cCGGcUCGCGAAG------------UGGUCG------------AGCCACg -5'
23034 3' -58.1 NC_005178.1 + 16953 0.68 0.363861
Target:  5'- cGGCCaGGGCGCcg-AgCAGCUCGGccucGCu -3'
miRNA:   3'- -CCGG-CUCGCGaagUgGUCGAGCCa---CG- -5'
23034 3' -58.1 NC_005178.1 + 33656 0.68 0.354409
Target:  5'- aGCgCGAGCGCgUCGCCGGUcgcgaccagcacgUCGGcucgaUGCc -3'
miRNA:   3'- cCG-GCUCGCGaAGUGGUCG-------------AGCC-----ACG- -5'
23034 3' -58.1 NC_005178.1 + 24445 0.68 0.335213
Target:  5'- cGGCUGcGGCGCggugaacaugccCACCuGCUUGGUGg -3'
miRNA:   3'- -CCGGC-UCGCGaa----------GUGGuCGAGCCACg -5'
23034 3' -58.1 NC_005178.1 + 6540 0.68 0.330332
Target:  5'- uGGCCGAacugGC-UCACCAGCUCcggcaaGGUGg -3'
miRNA:   3'- -CCGGCUcg--CGaAGUGGUCGAG------CCACg -5'
23034 3' -58.1 NC_005178.1 + 16282 0.68 0.338497
Target:  5'- cGGCCGAGcCGUUcaUgGCCAugaugcGCU-GGUGCg -3'
miRNA:   3'- -CCGGCUC-GCGA--AgUGGU------CGAgCCACG- -5'
23034 3' -58.1 NC_005178.1 + 10480 0.68 0.330332
Target:  5'- cGUCGAGCGCUUCGaacagGGCUUGcGUGa -3'
miRNA:   3'- cCGGCUCGCGAAGUgg---UCGAGC-CACg -5'
23034 3' -58.1 NC_005178.1 + 11449 0.68 0.355261
Target:  5'- uGGCUGGGCGCgUUCGCuCAGUg-GGUaaaacGCa -3'
miRNA:   3'- -CCGGCUCGCG-AAGUG-GUCGagCCA-----CG- -5'
23034 3' -58.1 NC_005178.1 + 10713 0.69 0.299136
Target:  5'- gGGUCG-GCGCggagaCGCCGGC-CGGgGCg -3'
miRNA:   3'- -CCGGCuCGCGaa---GUGGUCGaGCCaCG- -5'
23034 3' -58.1 NC_005178.1 + 9661 0.69 0.306716
Target:  5'- cGGCCG-GUgGCUUCGCCgAGC-CGGccgagGCg -3'
miRNA:   3'- -CCGGCuCG-CGAAGUGG-UCGaGCCa----CG- -5'
23034 3' -58.1 NC_005178.1 + 4093 0.69 0.296146
Target:  5'- uGGCCGuGgGCUacgacauccacgaCGCCAGCagGGUGUg -3'
miRNA:   3'- -CCGGCuCgCGAa------------GUGGUCGagCCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.