miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23034 3' -58.1 NC_005178.1 + 10592 0.66 0.427968
Target:  5'- cGGCCGAGCGa---GCCGGCacCGcaGCa -3'
miRNA:   3'- -CCGGCUCGCgaagUGGUCGa-GCcaCG- -5'
23034 3' -58.1 NC_005178.1 + 9944 0.66 0.447475
Target:  5'- uGGCCGAGCGCa-CGCCcGCgacgCGa-GCg -3'
miRNA:   3'- -CCGGCUCGCGaaGUGGuCGa---GCcaCG- -5'
23034 3' -58.1 NC_005178.1 + 20581 0.66 0.447475
Target:  5'- --aCGGGCGCccacUUCGCCGGgUCGGgGUu -3'
miRNA:   3'- ccgGCUCGCG----AAGUGGUCgAGCCaCG- -5'
23034 3' -58.1 NC_005178.1 + 13185 0.66 0.467467
Target:  5'- uGGCCaGGCGCUggagCACCuccauagCGGUGg -3'
miRNA:   3'- -CCGGcUCGCGAa---GUGGucga---GCCACg -5'
23034 3' -58.1 NC_005178.1 + 28474 0.66 0.457413
Target:  5'- aGGCCG-GUauGCUgUCGCUGG-UCGGUGUg -3'
miRNA:   3'- -CCGGCuCG--CGA-AGUGGUCgAGCCACG- -5'
23034 3' -58.1 NC_005178.1 + 12359 0.66 0.437659
Target:  5'- cGGCagGcAGCGCgaUCACCAGCgguuUCGGccaggGCa -3'
miRNA:   3'- -CCGg-C-UCGCGa-AGUGGUCG----AGCCa----CG- -5'
23034 3' -58.1 NC_005178.1 + 16070 0.66 0.467467
Target:  5'- -cCCGAGCGCga-ACgCGGCUU-GUGCa -3'
miRNA:   3'- ccGGCUCGCGaagUG-GUCGAGcCACG- -5'
23034 3' -58.1 NC_005178.1 + 27513 0.66 0.477634
Target:  5'- aGGCUGAuGCGCUggGCC-GCcgUGGUGg -3'
miRNA:   3'- -CCGGCU-CGCGAagUGGuCGa-GCCACg -5'
23034 3' -58.1 NC_005178.1 + 9723 0.66 0.456414
Target:  5'- cGGCCGgcucGGCGaagcCACCGGCcgcgcagaucagaUCGaGUGCa -3'
miRNA:   3'- -CCGGC----UCGCgaa-GUGGUCG-------------AGC-CACG- -5'
23034 3' -58.1 NC_005178.1 + 35172 0.66 0.437659
Target:  5'- cGGaCCGGcCGCcagCGgCAGCUCGGcgGCg -3'
miRNA:   3'- -CC-GGCUcGCGaa-GUgGUCGAGCCa-CG- -5'
23034 3' -58.1 NC_005178.1 + 21236 0.66 0.447475
Target:  5'- cGGCCGGcCGCaUCAUCGGCgucgaacCGGacgGCg -3'
miRNA:   3'- -CCGGCUcGCGaAGUGGUCGa------GCCa--CG- -5'
23034 3' -58.1 NC_005178.1 + 16891 0.66 0.457413
Target:  5'- aGGCCGAGCuGCUcggCGCCcuGGC-CGaG-GCa -3'
miRNA:   3'- -CCGGCUCG-CGAa--GUGG--UCGaGC-CaCG- -5'
23034 3' -58.1 NC_005178.1 + 17834 0.66 0.444518
Target:  5'- aGGCCGAGCGCacccugggagCGCCuGCcgcccUCGGcgagguccaggacgUGCu -3'
miRNA:   3'- -CCGGCUCGCGaa--------GUGGuCG-----AGCC--------------ACG- -5'
23034 3' -58.1 NC_005178.1 + 36371 0.67 0.372603
Target:  5'- cGCUGAuucuGCGCUUCACCGGgUCGuuuuccaGCa -3'
miRNA:   3'- cCGGCU----CGCGAAGUGGUCgAGCca-----CG- -5'
23034 3' -58.1 NC_005178.1 + 23228 0.67 0.372603
Target:  5'- uGGUCGAGCGCauccgCGCCGa---GGUGCc -3'
miRNA:   3'- -CCGGCUCGCGaa---GUGGUcgagCCACG- -5'
23034 3' -58.1 NC_005178.1 + 10430 0.67 0.418404
Target:  5'- -cUCGAuGuCGCUgccCACCAGCUCGGccaGCg -3'
miRNA:   3'- ccGGCU-C-GCGAa--GUGGUCGAGCCa--CG- -5'
23034 3' -58.1 NC_005178.1 + 8570 0.67 0.408972
Target:  5'- -uCCG-GCGCUUCGCCGa--CGGUGUa -3'
miRNA:   3'- ccGGCuCGCGAAGUGGUcgaGCCACG- -5'
23034 3' -58.1 NC_005178.1 + 22107 0.67 0.408972
Target:  5'- gGGCUGgaAGaugaacgGUUUUACCGGCUUGGUGg -3'
miRNA:   3'- -CCGGC--UCg------CGAAGUGGUCGAGCCACg -5'
23034 3' -58.1 NC_005178.1 + 2933 0.67 0.390511
Target:  5'- gGGUaaugGAGCGUUUCcgGCUguAGC-CGGUGCg -3'
miRNA:   3'- -CCGg---CUCGCGAAG--UGG--UCGaGCCACG- -5'
23034 3' -58.1 NC_005178.1 + 8874 0.67 0.381487
Target:  5'- cGCCGGGCGaCUUUcuuGCCGaCcUGGUGCg -3'
miRNA:   3'- cCGGCUCGC-GAAG---UGGUcGaGCCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.