Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23034 | 3' | -58.1 | NC_005178.1 | + | 15150 | 1.14 | 0.000145 |
Target: 5'- uGGCCGAGCGCUUCACCAGCUCGGUGCg -3' miRNA: 3'- -CCGGCUCGCGAAGUGGUCGAGCCACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 20485 | 0.78 | 0.069444 |
Target: 5'- aGGCCGAGgGUUUCGCgCAGCUUGGccagGUu -3' miRNA: 3'- -CCGGCUCgCGAAGUG-GUCGAGCCa---CG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 14066 | 0.76 | 0.092701 |
Target: 5'- uGGCCGuccgGGUGgUcCACCAGCUCGG-GCa -3' miRNA: 3'- -CCGGC----UCGCgAaGUGGUCGAGCCaCG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 9486 | 0.75 | 0.110026 |
Target: 5'- aGGCCgGGGCgGUUUCGCuCAGUggaCGGUGCg -3' miRNA: 3'- -CCGG-CUCG-CGAAGUG-GUCGa--GCCACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 22694 | 0.75 | 0.110026 |
Target: 5'- aGGCCGAGCuGgaUCGCCGGgUCGcUGCc -3' miRNA: 3'- -CCGGCUCG-CgaAGUGGUCgAGCcACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 3032 | 0.72 | 0.176796 |
Target: 5'- aGGCCGAGCGUggCGCCc---UGGUGCc -3' miRNA: 3'- -CCGGCUCGCGaaGUGGucgaGCCACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 4468 | 0.72 | 0.186685 |
Target: 5'- cGGUCGGGUGCgguUCAUCGauccGCUCGGccUGCa -3' miRNA: 3'- -CCGGCUCGCGa--AGUGGU----CGAGCC--ACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 32260 | 0.72 | 0.19181 |
Target: 5'- uGGCCaaaCGCUcggugUCGgcguCCAGCUCGGUGCu -3' miRNA: 3'- -CCGGcucGCGA-----AGU----GGUCGAGCCACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 24647 | 0.72 | 0.197058 |
Target: 5'- cGGCCGaAGCGCccaggUCGCCGGUaucCGGcuUGCu -3' miRNA: 3'- -CCGGC-UCGCGa----AGUGGUCGa--GCC--ACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 8755 | 0.72 | 0.197058 |
Target: 5'- uGCCGugGGCGaCUUgGCCAGCgugCGGgcgGCg -3' miRNA: 3'- cCGGC--UCGC-GAAgUGGUCGa--GCCa--CG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 4484 | 0.72 | 0.197058 |
Target: 5'- cGCCcAGCGCU--ACCGGCagUGGUGCg -3' miRNA: 3'- cCGGcUCGCGAagUGGUCGa-GCCACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 23535 | 0.71 | 0.219318 |
Target: 5'- cGGCCGAGCaGCgg-GCCGGCUucgcgcCGG-GCg -3' miRNA: 3'- -CCGGCUCG-CGaagUGGUCGA------GCCaCG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 27366 | 0.71 | 0.219318 |
Target: 5'- aGGCCGGcGCGCUgcugCGCCuggagcuucuGCUCGGcGUu -3' miRNA: 3'- -CCGGCU-CGCGAa---GUGGu---------CGAGCCaCG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 18148 | 0.71 | 0.230624 |
Target: 5'- gGGCCaGGCGCUgcggcagguUCGCCAGCUgcucgcgagcgacCGG-GCu -3' miRNA: 3'- -CCGGcUCGCGA---------AGUGGUCGA-------------GCCaCG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 3805 | 0.71 | 0.231233 |
Target: 5'- uGGCCcGGCGCgUCagcuugaaggugGCCAGCUUGGccugGCg -3' miRNA: 3'- -CCGGcUCGCGaAG------------UGGUCGAGCCa---CG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 8651 | 0.71 | 0.237393 |
Target: 5'- cGG-CGAGCGCguggugcagUUgggGCCGGCUCGGccUGCg -3' miRNA: 3'- -CCgGCUCGCGa--------AG---UGGUCGAGCC--ACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 29963 | 0.7 | 0.243689 |
Target: 5'- cGGCCuGGCGUggaaCGCgCAGCccggcaacUCGGUGCa -3' miRNA: 3'- -CCGGcUCGCGaa--GUG-GUCG--------AGCCACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 36011 | 0.7 | 0.256698 |
Target: 5'- aGGCCGAGgGCgacacuuacauuUUCACCggGGC-CGGgGCg -3' miRNA: 3'- -CCGGCUCgCG------------AAGUGG--UCGaGCCaCG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 16256 | 0.7 | 0.263413 |
Target: 5'- uGGCCGAG-GCcggUCACC-GCUCGcaGCa -3' miRNA: 3'- -CCGGCUCgCGa--AGUGGuCGAGCcaCG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 17333 | 0.7 | 0.263413 |
Target: 5'- gGGCCGAG-GUcgC-CCAGCUCGGcaGCc -3' miRNA: 3'- -CCGGCUCgCGaaGuGGUCGAGCCa-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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