miRNA display CGI


Results 1 - 20 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23034 3' -58.1 NC_005178.1 + 751 0.67 0.418404
Target:  5'- uGCCGAcCuGCUUCGCCAauGCUCGccgGCu -3'
miRNA:   3'- cCGGCUcG-CGAAGUGGU--CGAGCca-CG- -5'
23034 3' -58.1 NC_005178.1 + 2933 0.67 0.390511
Target:  5'- gGGUaaugGAGCGUUUCcgGCUguAGC-CGGUGCg -3'
miRNA:   3'- -CCGg---CUCGCGAAG--UGG--UCGaGCCACG- -5'
23034 3' -58.1 NC_005178.1 + 3032 0.72 0.176796
Target:  5'- aGGCCGAGCGUggCGCCc---UGGUGCc -3'
miRNA:   3'- -CCGGCUCGCGaaGUGGucgaGCCACG- -5'
23034 3' -58.1 NC_005178.1 + 3805 0.71 0.231233
Target:  5'- uGGCCcGGCGCgUCagcuugaaggugGCCAGCUUGGccugGCg -3'
miRNA:   3'- -CCGGcUCGCGaAG------------UGGUCGAGCCa---CG- -5'
23034 3' -58.1 NC_005178.1 + 4093 0.69 0.296146
Target:  5'- uGGCCGuGgGCUacgacauccacgaCGCCAGCagGGUGUg -3'
miRNA:   3'- -CCGGCuCgCGAa------------GUGGUCGagCCACG- -5'
23034 3' -58.1 NC_005178.1 + 4468 0.72 0.186685
Target:  5'- cGGUCGGGUGCgguUCAUCGauccGCUCGGccUGCa -3'
miRNA:   3'- -CCGGCUCGCGa--AGUGGU----CGAGCC--ACG- -5'
23034 3' -58.1 NC_005178.1 + 4484 0.72 0.197058
Target:  5'- cGCCcAGCGCU--ACCGGCagUGGUGCg -3'
miRNA:   3'- cCGGcUCGCGAagUGGUCGa-GCCACG- -5'
23034 3' -58.1 NC_005178.1 + 4574 0.69 0.299136
Target:  5'- aGGCCgGAGCGUUgccgcUCgGCCAGCUCGcaccacUGCc -3'
miRNA:   3'- -CCGG-CUCGCGA-----AG-UGGUCGAGCc-----ACG- -5'
23034 3' -58.1 NC_005178.1 + 6540 0.68 0.330332
Target:  5'- uGGCCGAacugGC-UCACCAGCUCcggcaaGGUGg -3'
miRNA:   3'- -CCGGCUcg--CGaAGUGGUCGAG------CCACg -5'
23034 3' -58.1 NC_005178.1 + 7793 0.68 0.363861
Target:  5'- cGCCaGGCGCUUCuucaggucuucgGCCGGCuccgaauagcgcUCGGUGa -3'
miRNA:   3'- cCGGcUCGCGAAG------------UGGUCG------------AGCCACg -5'
23034 3' -58.1 NC_005178.1 + 8570 0.67 0.408972
Target:  5'- -uCCG-GCGCUUCGCCGa--CGGUGUa -3'
miRNA:   3'- ccGGCuCGCGAAGUGGUcgaGCCACG- -5'
23034 3' -58.1 NC_005178.1 + 8651 0.71 0.237393
Target:  5'- cGG-CGAGCGCguggugcagUUgggGCCGGCUCGGccUGCg -3'
miRNA:   3'- -CCgGCUCGCGa--------AG---UGGUCGAGCC--ACG- -5'
23034 3' -58.1 NC_005178.1 + 8755 0.72 0.197058
Target:  5'- uGCCGugGGCGaCUUgGCCAGCgugCGGgcgGCg -3'
miRNA:   3'- cCGGC--UCGC-GAAgUGGUCGa--GCCa--CG- -5'
23034 3' -58.1 NC_005178.1 + 8874 0.67 0.381487
Target:  5'- cGCCGGGCGaCUUUcuuGCCGaCcUGGUGCg -3'
miRNA:   3'- cCGGCUCGC-GAAG---UGGUcGaGCCACG- -5'
23034 3' -58.1 NC_005178.1 + 9486 0.75 0.110026
Target:  5'- aGGCCgGGGCgGUUUCGCuCAGUggaCGGUGCg -3'
miRNA:   3'- -CCGG-CUCG-CGAAGUG-GUCGa--GCCACG- -5'
23034 3' -58.1 NC_005178.1 + 9661 0.69 0.306716
Target:  5'- cGGCCG-GUgGCUUCGCCgAGC-CGGccgagGCg -3'
miRNA:   3'- -CCGGCuCG-CGAAGUGG-UCGaGCCa----CG- -5'
23034 3' -58.1 NC_005178.1 + 9723 0.66 0.456414
Target:  5'- cGGCCGgcucGGCGaagcCACCGGCcgcgcagaucagaUCGaGUGCa -3'
miRNA:   3'- -CCGGC----UCGCgaa-GUGGUCG-------------AGC-CACG- -5'
23034 3' -58.1 NC_005178.1 + 9944 0.66 0.447475
Target:  5'- uGGCCGAGCGCa-CGCCcGCgacgCGa-GCg -3'
miRNA:   3'- -CCGGCUCGCGaaGUGGuCGa---GCcaCG- -5'
23034 3' -58.1 NC_005178.1 + 10327 0.67 0.408972
Target:  5'- gGGCCGGGCGCggaggggcgaagcgCGCCGgGCUgcgcuggccgagcUGGUGg -3'
miRNA:   3'- -CCGGCUCGCGaa------------GUGGU-CGA-------------GCCACg -5'
23034 3' -58.1 NC_005178.1 + 10341 0.69 0.322314
Target:  5'- cGCCGAGCuGCUcgacuacCACCAGCgUGGccgGCa -3'
miRNA:   3'- cCGGCUCG-CGAa------GUGGUCGaGCCa--CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.