Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23034 | 3' | -58.1 | NC_005178.1 | + | 751 | 0.67 | 0.418404 |
Target: 5'- uGCCGAcCuGCUUCGCCAauGCUCGccgGCu -3' miRNA: 3'- cCGGCUcG-CGAAGUGGU--CGAGCca-CG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 2933 | 0.67 | 0.390511 |
Target: 5'- gGGUaaugGAGCGUUUCcgGCUguAGC-CGGUGCg -3' miRNA: 3'- -CCGg---CUCGCGAAG--UGG--UCGaGCCACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 3032 | 0.72 | 0.176796 |
Target: 5'- aGGCCGAGCGUggCGCCc---UGGUGCc -3' miRNA: 3'- -CCGGCUCGCGaaGUGGucgaGCCACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 3805 | 0.71 | 0.231233 |
Target: 5'- uGGCCcGGCGCgUCagcuugaaggugGCCAGCUUGGccugGCg -3' miRNA: 3'- -CCGGcUCGCGaAG------------UGGUCGAGCCa---CG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 4093 | 0.69 | 0.296146 |
Target: 5'- uGGCCGuGgGCUacgacauccacgaCGCCAGCagGGUGUg -3' miRNA: 3'- -CCGGCuCgCGAa------------GUGGUCGagCCACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 4468 | 0.72 | 0.186685 |
Target: 5'- cGGUCGGGUGCgguUCAUCGauccGCUCGGccUGCa -3' miRNA: 3'- -CCGGCUCGCGa--AGUGGU----CGAGCC--ACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 4484 | 0.72 | 0.197058 |
Target: 5'- cGCCcAGCGCU--ACCGGCagUGGUGCg -3' miRNA: 3'- cCGGcUCGCGAagUGGUCGa-GCCACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 4574 | 0.69 | 0.299136 |
Target: 5'- aGGCCgGAGCGUUgccgcUCgGCCAGCUCGcaccacUGCc -3' miRNA: 3'- -CCGG-CUCGCGA-----AG-UGGUCGAGCc-----ACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 6540 | 0.68 | 0.330332 |
Target: 5'- uGGCCGAacugGC-UCACCAGCUCcggcaaGGUGg -3' miRNA: 3'- -CCGGCUcg--CGaAGUGGUCGAG------CCACg -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 7793 | 0.68 | 0.363861 |
Target: 5'- cGCCaGGCGCUUCuucaggucuucgGCCGGCuccgaauagcgcUCGGUGa -3' miRNA: 3'- cCGGcUCGCGAAG------------UGGUCG------------AGCCACg -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 8570 | 0.67 | 0.408972 |
Target: 5'- -uCCG-GCGCUUCGCCGa--CGGUGUa -3' miRNA: 3'- ccGGCuCGCGAAGUGGUcgaGCCACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 8651 | 0.71 | 0.237393 |
Target: 5'- cGG-CGAGCGCguggugcagUUgggGCCGGCUCGGccUGCg -3' miRNA: 3'- -CCgGCUCGCGa--------AG---UGGUCGAGCC--ACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 8755 | 0.72 | 0.197058 |
Target: 5'- uGCCGugGGCGaCUUgGCCAGCgugCGGgcgGCg -3' miRNA: 3'- cCGGC--UCGC-GAAgUGGUCGa--GCCa--CG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 8874 | 0.67 | 0.381487 |
Target: 5'- cGCCGGGCGaCUUUcuuGCCGaCcUGGUGCg -3' miRNA: 3'- cCGGCUCGC-GAAG---UGGUcGaGCCACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 9486 | 0.75 | 0.110026 |
Target: 5'- aGGCCgGGGCgGUUUCGCuCAGUggaCGGUGCg -3' miRNA: 3'- -CCGG-CUCG-CGAAGUG-GUCGa--GCCACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 9661 | 0.69 | 0.306716 |
Target: 5'- cGGCCG-GUgGCUUCGCCgAGC-CGGccgagGCg -3' miRNA: 3'- -CCGGCuCG-CGAAGUGG-UCGaGCCa----CG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 9723 | 0.66 | 0.456414 |
Target: 5'- cGGCCGgcucGGCGaagcCACCGGCcgcgcagaucagaUCGaGUGCa -3' miRNA: 3'- -CCGGC----UCGCgaa-GUGGUCG-------------AGC-CACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 9944 | 0.66 | 0.447475 |
Target: 5'- uGGCCGAGCGCa-CGCCcGCgacgCGa-GCg -3' miRNA: 3'- -CCGGCUCGCGaaGUGGuCGa---GCcaCG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 10327 | 0.67 | 0.408972 |
Target: 5'- gGGCCGGGCGCggaggggcgaagcgCGCCGgGCUgcgcuggccgagcUGGUGg -3' miRNA: 3'- -CCGGCUCGCGaa------------GUGGU-CGA-------------GCCACg -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 10341 | 0.69 | 0.322314 |
Target: 5'- cGCCGAGCuGCUcgacuacCACCAGCgUGGccgGCa -3' miRNA: 3'- cCGGCUCG-CGAa------GUGGUCGaGCCa--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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