miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23034 3' -58.1 NC_005178.1 + 37558 0.69 0.284414
Target:  5'- cGGCCGAGCuGCUcgaugcauucgCGCUGGUccUCGGUGa -3'
miRNA:   3'- -CCGGCUCG-CGAa----------GUGGUCG--AGCCACg -5'
23034 3' -58.1 NC_005178.1 + 37236 0.7 0.27727
Target:  5'- cGGCCuccaGGCGCagCGggUCGGaCUCGGUGCg -3'
miRNA:   3'- -CCGGc---UCGCGaaGU--GGUC-GAGCCACG- -5'
23034 3' -58.1 NC_005178.1 + 36535 0.67 0.390511
Target:  5'- cGGCCGAGCGgUagccUUGCCcGCUaCGGgGUg -3'
miRNA:   3'- -CCGGCUCGCgA----AGUGGuCGA-GCCaCG- -5'
23034 3' -58.1 NC_005178.1 + 36371 0.67 0.372603
Target:  5'- cGCUGAuucuGCGCUUCACCGGgUCGuuuuccaGCa -3'
miRNA:   3'- cCGGCU----CGCGAAGUGGUCgAGCca-----CG- -5'
23034 3' -58.1 NC_005178.1 + 36011 0.7 0.256698
Target:  5'- aGGCCGAGgGCgacacuuacauuUUCACCggGGC-CGGgGCg -3'
miRNA:   3'- -CCGGCUCgCG------------AAGUGG--UCGaGCCaCG- -5'
23034 3' -58.1 NC_005178.1 + 35172 0.66 0.437659
Target:  5'- cGGaCCGGcCGCcagCGgCAGCUCGGcgGCg -3'
miRNA:   3'- -CC-GGCUcGCGaa-GUgGUCGAGCCa-CG- -5'
23034 3' -58.1 NC_005178.1 + 34910 0.67 0.381487
Target:  5'- cGGUCGGGCGgaau-CCAGCcCGGUGg -3'
miRNA:   3'- -CCGGCUCGCgaaguGGUCGaGCCACg -5'
23034 3' -58.1 NC_005178.1 + 33656 0.68 0.354409
Target:  5'- aGCgCGAGCGCgUCGCCGGUcgcgaccagcacgUCGGcucgaUGCc -3'
miRNA:   3'- cCG-GCUCGCGaAGUGGUCG-------------AGCC-----ACG- -5'
23034 3' -58.1 NC_005178.1 + 33342 0.69 0.291703
Target:  5'- cGGUCGGcuuGgGCUUCugCGGCUuCGGcGCc -3'
miRNA:   3'- -CCGGCU---CgCGAAGugGUCGA-GCCaCG- -5'
23034 3' -58.1 NC_005178.1 + 32260 0.72 0.19181
Target:  5'- uGGCCaaaCGCUcggugUCGgcguCCAGCUCGGUGCu -3'
miRNA:   3'- -CCGGcucGCGA-----AGU----GGUCGAGCCACG- -5'
23034 3' -58.1 NC_005178.1 + 32134 0.67 0.403377
Target:  5'- aGCCGAuauugcgcacauccaGCGCggUCGCCAGUUgcgagaCGGUGg -3'
miRNA:   3'- cCGGCU---------------CGCGa-AGUGGUCGA------GCCACg -5'
23034 3' -58.1 NC_005178.1 + 29963 0.7 0.243689
Target:  5'- cGGCCuGGCGUggaaCGCgCAGCccggcaacUCGGUGCa -3'
miRNA:   3'- -CCGGcUCGCGaa--GUG-GUCG--------AGCCACG- -5'
23034 3' -58.1 NC_005178.1 + 29420 0.67 0.381487
Target:  5'- cGCCGGGCGCU-----GGCUCGGUu- -3'
miRNA:   3'- cCGGCUCGCGAaguggUCGAGCCAcg -5'
23034 3' -58.1 NC_005178.1 + 28852 0.68 0.363861
Target:  5'- uGGUCGAGCGCcUCGuCCAGUUCcucaccGCg -3'
miRNA:   3'- -CCGGCUCGCGaAGU-GGUCGAGcca---CG- -5'
23034 3' -58.1 NC_005178.1 + 28474 0.66 0.457413
Target:  5'- aGGCCG-GUauGCUgUCGCUGG-UCGGUGUg -3'
miRNA:   3'- -CCGGCuCG--CGA-AGUGGUCgAGCCACG- -5'
23034 3' -58.1 NC_005178.1 + 27513 0.66 0.477634
Target:  5'- aGGCUGAuGCGCUggGCC-GCcgUGGUGg -3'
miRNA:   3'- -CCGGCU-CGCGAagUGGuCGa-GCCACg -5'
23034 3' -58.1 NC_005178.1 + 27366 0.71 0.219318
Target:  5'- aGGCCGGcGCGCUgcugCGCCuggagcuucuGCUCGGcGUu -3'
miRNA:   3'- -CCGGCU-CGCGAa---GUGGu---------CGAGCCaCG- -5'
23034 3' -58.1 NC_005178.1 + 26191 0.67 0.399673
Target:  5'- uGGCCGcugcgGGCGUggCGCUGGCUCuGGcGUa -3'
miRNA:   3'- -CCGGC-----UCGCGaaGUGGUCGAG-CCaCG- -5'
23034 3' -58.1 NC_005178.1 + 25729 0.7 0.27027
Target:  5'- uGGCCgcGAGCaGUUUgC-CCAGCUCGGccUGCu -3'
miRNA:   3'- -CCGG--CUCG-CGAA-GuGGUCGAGCC--ACG- -5'
23034 3' -58.1 NC_005178.1 + 25575 0.67 0.418404
Target:  5'- cGCCGAGCGCgccCGCgaaCAGCa-GGUuGCa -3'
miRNA:   3'- cCGGCUCGCGaa-GUG---GUCGagCCA-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.