Results 1 - 20 of 67 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23034 | 3' | -58.1 | NC_005178.1 | + | 37558 | 0.69 | 0.284414 |
Target: 5'- cGGCCGAGCuGCUcgaugcauucgCGCUGGUccUCGGUGa -3' miRNA: 3'- -CCGGCUCG-CGAa----------GUGGUCG--AGCCACg -5' |
|||||||
23034 | 3' | -58.1 | NC_005178.1 | + | 37236 | 0.7 | 0.27727 |
Target: 5'- cGGCCuccaGGCGCagCGggUCGGaCUCGGUGCg -3' miRNA: 3'- -CCGGc---UCGCGaaGU--GGUC-GAGCCACG- -5' |
|||||||
23034 | 3' | -58.1 | NC_005178.1 | + | 36535 | 0.67 | 0.390511 |
Target: 5'- cGGCCGAGCGgUagccUUGCCcGCUaCGGgGUg -3' miRNA: 3'- -CCGGCUCGCgA----AGUGGuCGA-GCCaCG- -5' |
|||||||
23034 | 3' | -58.1 | NC_005178.1 | + | 36371 | 0.67 | 0.372603 |
Target: 5'- cGCUGAuucuGCGCUUCACCGGgUCGuuuuccaGCa -3' miRNA: 3'- cCGGCU----CGCGAAGUGGUCgAGCca-----CG- -5' |
|||||||
23034 | 3' | -58.1 | NC_005178.1 | + | 36011 | 0.7 | 0.256698 |
Target: 5'- aGGCCGAGgGCgacacuuacauuUUCACCggGGC-CGGgGCg -3' miRNA: 3'- -CCGGCUCgCG------------AAGUGG--UCGaGCCaCG- -5' |
|||||||
23034 | 3' | -58.1 | NC_005178.1 | + | 35172 | 0.66 | 0.437659 |
Target: 5'- cGGaCCGGcCGCcagCGgCAGCUCGGcgGCg -3' miRNA: 3'- -CC-GGCUcGCGaa-GUgGUCGAGCCa-CG- -5' |
|||||||
23034 | 3' | -58.1 | NC_005178.1 | + | 34910 | 0.67 | 0.381487 |
Target: 5'- cGGUCGGGCGgaau-CCAGCcCGGUGg -3' miRNA: 3'- -CCGGCUCGCgaaguGGUCGaGCCACg -5' |
|||||||
23034 | 3' | -58.1 | NC_005178.1 | + | 33656 | 0.68 | 0.354409 |
Target: 5'- aGCgCGAGCGCgUCGCCGGUcgcgaccagcacgUCGGcucgaUGCc -3' miRNA: 3'- cCG-GCUCGCGaAGUGGUCG-------------AGCC-----ACG- -5' |
|||||||
23034 | 3' | -58.1 | NC_005178.1 | + | 33342 | 0.69 | 0.291703 |
Target: 5'- cGGUCGGcuuGgGCUUCugCGGCUuCGGcGCc -3' miRNA: 3'- -CCGGCU---CgCGAAGugGUCGA-GCCaCG- -5' |
|||||||
23034 | 3' | -58.1 | NC_005178.1 | + | 32260 | 0.72 | 0.19181 |
Target: 5'- uGGCCaaaCGCUcggugUCGgcguCCAGCUCGGUGCu -3' miRNA: 3'- -CCGGcucGCGA-----AGU----GGUCGAGCCACG- -5' |
|||||||
23034 | 3' | -58.1 | NC_005178.1 | + | 32134 | 0.67 | 0.403377 |
Target: 5'- aGCCGAuauugcgcacauccaGCGCggUCGCCAGUUgcgagaCGGUGg -3' miRNA: 3'- cCGGCU---------------CGCGa-AGUGGUCGA------GCCACg -5' |
|||||||
23034 | 3' | -58.1 | NC_005178.1 | + | 29963 | 0.7 | 0.243689 |
Target: 5'- cGGCCuGGCGUggaaCGCgCAGCccggcaacUCGGUGCa -3' miRNA: 3'- -CCGGcUCGCGaa--GUG-GUCG--------AGCCACG- -5' |
|||||||
23034 | 3' | -58.1 | NC_005178.1 | + | 29420 | 0.67 | 0.381487 |
Target: 5'- cGCCGGGCGCU-----GGCUCGGUu- -3' miRNA: 3'- cCGGCUCGCGAaguggUCGAGCCAcg -5' |
|||||||
23034 | 3' | -58.1 | NC_005178.1 | + | 28852 | 0.68 | 0.363861 |
Target: 5'- uGGUCGAGCGCcUCGuCCAGUUCcucaccGCg -3' miRNA: 3'- -CCGGCUCGCGaAGU-GGUCGAGcca---CG- -5' |
|||||||
23034 | 3' | -58.1 | NC_005178.1 | + | 28474 | 0.66 | 0.457413 |
Target: 5'- aGGCCG-GUauGCUgUCGCUGG-UCGGUGUg -3' miRNA: 3'- -CCGGCuCG--CGA-AGUGGUCgAGCCACG- -5' |
|||||||
23034 | 3' | -58.1 | NC_005178.1 | + | 27513 | 0.66 | 0.477634 |
Target: 5'- aGGCUGAuGCGCUggGCC-GCcgUGGUGg -3' miRNA: 3'- -CCGGCU-CGCGAagUGGuCGa-GCCACg -5' |
|||||||
23034 | 3' | -58.1 | NC_005178.1 | + | 27366 | 0.71 | 0.219318 |
Target: 5'- aGGCCGGcGCGCUgcugCGCCuggagcuucuGCUCGGcGUu -3' miRNA: 3'- -CCGGCU-CGCGAa---GUGGu---------CGAGCCaCG- -5' |
|||||||
23034 | 3' | -58.1 | NC_005178.1 | + | 26191 | 0.67 | 0.399673 |
Target: 5'- uGGCCGcugcgGGCGUggCGCUGGCUCuGGcGUa -3' miRNA: 3'- -CCGGC-----UCGCGaaGUGGUCGAG-CCaCG- -5' |
|||||||
23034 | 3' | -58.1 | NC_005178.1 | + | 25729 | 0.7 | 0.27027 |
Target: 5'- uGGCCgcGAGCaGUUUgC-CCAGCUCGGccUGCu -3' miRNA: 3'- -CCGG--CUCG-CGAA-GuGGUCGAGCC--ACG- -5' |
|||||||
23034 | 3' | -58.1 | NC_005178.1 | + | 25575 | 0.67 | 0.418404 |
Target: 5'- cGCCGAGCGCgccCGCgaaCAGCa-GGUuGCa -3' miRNA: 3'- cCGGCUCGCGaa-GUG---GUCGagCCA-CG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home