miRNA display CGI


Results 1 - 20 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23034 3' -58.1 NC_005178.1 + 25575 0.67 0.418404
Target:  5'- cGCCGAGCGCgccCGCgaaCAGCa-GGUuGCa -3'
miRNA:   3'- cCGGCUCGCGaa-GUG---GUCGagCCA-CG- -5'
23034 3' -58.1 NC_005178.1 + 28852 0.68 0.363861
Target:  5'- uGGUCGAGCGCcUCGuCCAGUUCcucaccGCg -3'
miRNA:   3'- -CCGGCUCGCGaAGU-GGUCGAGcca---CG- -5'
23034 3' -58.1 NC_005178.1 + 23228 0.67 0.372603
Target:  5'- uGGUCGAGCGCauccgCGCCGa---GGUGCc -3'
miRNA:   3'- -CCGGCUCGCGaa---GUGGUcgagCCACG- -5'
23034 3' -58.1 NC_005178.1 + 36371 0.67 0.372603
Target:  5'- cGCUGAuucuGCGCUUCACCGGgUCGuuuuccaGCa -3'
miRNA:   3'- cCGGCU----CGCGAAGUGGUCgAGCca-----CG- -5'
23034 3' -58.1 NC_005178.1 + 29420 0.67 0.381487
Target:  5'- cGCCGGGCGCU-----GGCUCGGUu- -3'
miRNA:   3'- cCGGCUCGCGAaguggUCGAGCCAcg -5'
23034 3' -58.1 NC_005178.1 + 36535 0.67 0.390511
Target:  5'- cGGCCGAGCGgUagccUUGCCcGCUaCGGgGUg -3'
miRNA:   3'- -CCGGCUCGCgA----AGUGGuCGA-GCCaCG- -5'
23034 3' -58.1 NC_005178.1 + 26191 0.67 0.399673
Target:  5'- uGGCCGcugcgGGCGUggCGCUGGCUCuGGcGUa -3'
miRNA:   3'- -CCGGC-----UCGCGaaGUGGUCGAG-CCaCG- -5'
23034 3' -58.1 NC_005178.1 + 10327 0.67 0.408972
Target:  5'- gGGCCGGGCGCggaggggcgaagcgCGCCGgGCUgcgcuggccgagcUGGUGg -3'
miRNA:   3'- -CCGGCUCGCGaa------------GUGGU-CGA-------------GCCACg -5'
23034 3' -58.1 NC_005178.1 + 751 0.67 0.418404
Target:  5'- uGCCGAcCuGCUUCGCCAauGCUCGccgGCu -3'
miRNA:   3'- cCGGCUcG-CGAAGUGGU--CGAGCca-CG- -5'
23034 3' -58.1 NC_005178.1 + 11449 0.68 0.355261
Target:  5'- uGGCUGGGCGCgUUCGCuCAGUg-GGUaaaacGCa -3'
miRNA:   3'- -CCGGCUCGCG-AAGUG-GUCGagCCA-----CG- -5'
23034 3' -58.1 NC_005178.1 + 16282 0.68 0.338497
Target:  5'- cGGCCGAGcCGUUcaUgGCCAugaugcGCU-GGUGCg -3'
miRNA:   3'- -CCGGCUC-GCGA--AgUGGU------CGAgCCACG- -5'
23034 3' -58.1 NC_005178.1 + 10480 0.68 0.330332
Target:  5'- cGUCGAGCGCUUCGaacagGGCUUGcGUGa -3'
miRNA:   3'- cCGGCUCGCGAAGUgg---UCGAGC-CACg -5'
23034 3' -58.1 NC_005178.1 + 3032 0.72 0.176796
Target:  5'- aGGCCGAGCGUggCGCCc---UGGUGCc -3'
miRNA:   3'- -CCGGCUCGCGaaGUGGucgaGCCACG- -5'
23034 3' -58.1 NC_005178.1 + 8755 0.72 0.197058
Target:  5'- uGCCGugGGCGaCUUgGCCAGCgugCGGgcgGCg -3'
miRNA:   3'- cCGGC--UCGC-GAAgUGGUCGa--GCCa--CG- -5'
23034 3' -58.1 NC_005178.1 + 4484 0.72 0.197058
Target:  5'- cGCCcAGCGCU--ACCGGCagUGGUGCg -3'
miRNA:   3'- cCGGcUCGCGAagUGGUCGa-GCCACG- -5'
23034 3' -58.1 NC_005178.1 + 29963 0.7 0.243689
Target:  5'- cGGCCuGGCGUggaaCGCgCAGCccggcaacUCGGUGCa -3'
miRNA:   3'- -CCGGcUCGCGaa--GUG-GUCG--------AGCCACG- -5'
23034 3' -58.1 NC_005178.1 + 36011 0.7 0.256698
Target:  5'- aGGCCGAGgGCgacacuuacauuUUCACCggGGC-CGGgGCg -3'
miRNA:   3'- -CCGGCUCgCG------------AAGUGG--UCGaGCCaCG- -5'
23034 3' -58.1 NC_005178.1 + 17333 0.7 0.263413
Target:  5'- gGGCCGAG-GUcgC-CCAGCUCGGcaGCc -3'
miRNA:   3'- -CCGGCUCgCGaaGuGGUCGAGCCa-CG- -5'
23034 3' -58.1 NC_005178.1 + 4093 0.69 0.296146
Target:  5'- uGGCCGuGgGCUacgacauccacgaCGCCAGCagGGUGUg -3'
miRNA:   3'- -CCGGCuCgCGAa------------GUGGUCGagCCACG- -5'
23034 3' -58.1 NC_005178.1 + 9661 0.69 0.306716
Target:  5'- cGGCCG-GUgGCUUCGCCgAGC-CGGccgagGCg -3'
miRNA:   3'- -CCGGCuCG-CGAAGUGG-UCGaGCCa----CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.