Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23034 | 3' | -58.1 | NC_005178.1 | + | 36011 | 0.7 | 0.256698 |
Target: 5'- aGGCCGAGgGCgacacuuacauuUUCACCggGGC-CGGgGCg -3' miRNA: 3'- -CCGGCUCgCG------------AAGUGG--UCGaGCCaCG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 17333 | 0.7 | 0.263413 |
Target: 5'- gGGCCGAG-GUcgC-CCAGCUCGGcaGCc -3' miRNA: 3'- -CCGGCUCgCGaaGuGGUCGAGCCa-CG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 10341 | 0.69 | 0.322314 |
Target: 5'- cGCCGAGCuGCUcgacuacCACCAGCgUGGccgGCa -3' miRNA: 3'- cCGGCUCG-CGAa------GUGGUCGaGCCa--CG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 15778 | 0.69 | 0.314442 |
Target: 5'- cGGCCGAgGCGUUgcgCGgCGGCUCGaUGg -3' miRNA: 3'- -CCGGCU-CGCGAa--GUgGUCGAGCcACg -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 10713 | 0.69 | 0.299136 |
Target: 5'- gGGUCG-GCGCggagaCGCCGGC-CGGgGCg -3' miRNA: 3'- -CCGGCuCGCGaa---GUGGUCGaGCCaCG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 4574 | 0.69 | 0.299136 |
Target: 5'- aGGCCgGAGCGUUgccgcUCgGCCAGCUCGcaccacUGCc -3' miRNA: 3'- -CCGG-CUCGCGA-----AG-UGGUCGAGCc-----ACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 33342 | 0.69 | 0.291703 |
Target: 5'- cGGUCGGcuuGgGCUUCugCGGCUuCGGcGCc -3' miRNA: 3'- -CCGGCU---CgCGAAGugGUCGA-GCCaCG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 37558 | 0.69 | 0.284414 |
Target: 5'- cGGCCGAGCuGCUcgaugcauucgCGCUGGUccUCGGUGa -3' miRNA: 3'- -CCGGCUCG-CGAa----------GUGGUCG--AGCCACg -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 4093 | 0.69 | 0.296146 |
Target: 5'- uGGCCGuGgGCUacgacauccacgaCGCCAGCagGGUGUg -3' miRNA: 3'- -CCGGCuCgCGAa------------GUGGUCGagCCACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 9661 | 0.69 | 0.306716 |
Target: 5'- cGGCCG-GUgGCUUCGCCgAGC-CGGccgagGCg -3' miRNA: 3'- -CCGGCuCG-CGAAGUGG-UCGaGCCa----CG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 10480 | 0.68 | 0.330332 |
Target: 5'- cGUCGAGCGCUUCGaacagGGCUUGcGUGa -3' miRNA: 3'- cCGGCUCGCGAAGUgg---UCGAGC-CACg -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 6540 | 0.68 | 0.330332 |
Target: 5'- uGGCCGAacugGC-UCACCAGCUCcggcaaGGUGg -3' miRNA: 3'- -CCGGCUcg--CGaAGUGGUCGAG------CCACg -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 16282 | 0.68 | 0.338497 |
Target: 5'- cGGCCGAGcCGUUcaUgGCCAugaugcGCU-GGUGCg -3' miRNA: 3'- -CCGGCUC-GCGA--AgUGGU------CGAgCCACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 11449 | 0.68 | 0.355261 |
Target: 5'- uGGCUGGGCGCgUUCGCuCAGUg-GGUaaaacGCa -3' miRNA: 3'- -CCGGCUCGCG-AAGUG-GUCGagCCA-----CG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 28852 | 0.68 | 0.363861 |
Target: 5'- uGGUCGAGCGCcUCGuCCAGUUCcucaccGCg -3' miRNA: 3'- -CCGGCUCGCGaAGU-GGUCGAGcca---CG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 24445 | 0.68 | 0.335213 |
Target: 5'- cGGCUGcGGCGCggugaacaugccCACCuGCUUGGUGg -3' miRNA: 3'- -CCGGC-UCGCGaa----------GUGGuCGAGCCACg -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 33656 | 0.68 | 0.354409 |
Target: 5'- aGCgCGAGCGCgUCGCCGGUcgcgaccagcacgUCGGcucgaUGCc -3' miRNA: 3'- cCG-GCUCGCGaAGUGGUCG-------------AGCC-----ACG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 16953 | 0.68 | 0.363861 |
Target: 5'- cGGCCaGGGCGCcg-AgCAGCUCGGccucGCu -3' miRNA: 3'- -CCGG-CUCGCGaagUgGUCGAGCCa---CG- -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 7793 | 0.68 | 0.363861 |
Target: 5'- cGCCaGGCGCUUCuucaggucuucgGCCGGCuccgaauagcgcUCGGUGa -3' miRNA: 3'- cCGGcUCGCGAAG------------UGGUCG------------AGCCACg -5' |
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23034 | 3' | -58.1 | NC_005178.1 | + | 26191 | 0.67 | 0.399673 |
Target: 5'- uGGCCGcugcgGGCGUggCGCUGGCUCuGGcGUa -3' miRNA: 3'- -CCGGC-----UCGCGaaGUGGUCGAG-CCaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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