Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23034 | 5' | -58.7 | NC_005178.1 | + | 9742 | 0.7 | 0.221611 |
Target: 5'- aGGAGCaagGuGACCGCCUCGGCcggcucggcgaaGCCaCCGg -3' miRNA: 3'- aCCUUGa--C-CUGGCGGAGUUG------------CGG-GGU- -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 20603 | 0.7 | 0.227567 |
Target: 5'- gGcGAGCUGGACgGCCUgaucaaCAGCGCUauCCAg -3' miRNA: 3'- aC-CUUGACCUGgCGGA------GUUGCGG--GGU- -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 35525 | 0.71 | 0.206747 |
Target: 5'- cGGAACUGG-CCGggcggguacggcuuaCCUUGGCGCCCg- -3' miRNA: 3'- aCCUUGACCuGGC---------------GGAGUUGCGGGgu -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 15703 | 0.74 | 0.111092 |
Target: 5'- cUGG-ACUGGaccaucgaGCCGCCgcgCAACGCCUCGg -3' miRNA: 3'- -ACCuUGACC--------UGGCGGa--GUUGCGGGGU- -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 4938 | 0.74 | 0.114296 |
Target: 5'- aGGAACUGG-CCGCCagCGGcCGCCCg- -3' miRNA: 3'- aCCUUGACCuGGCGGa-GUU-GCGGGgu -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 18459 | 0.75 | 0.107973 |
Target: 5'- aGGGGCcgGGAUgGCCUCAGuugaGCCCCGu -3' miRNA: 3'- aCCUUGa-CCUGgCGGAGUUg---CGGGGU- -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 1743 | 0.75 | 0.10198 |
Target: 5'- -cGAACUGGGCCGCCUUgAGCGgaCCCGc -3' miRNA: 3'- acCUUGACCUGGCGGAG-UUGCg-GGGU- -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 5308 | 0.76 | 0.083386 |
Target: 5'- cUGGAACUGG-CCGaCCUcCAGCGCCUgAa -3' miRNA: 3'- -ACCUUGACCuGGC-GGA-GUUGCGGGgU- -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 15113 | 1.08 | 0.000326 |
Target: 5'- cUGGAACUGGACCGCCUCAACGCCCCAc -3' miRNA: 3'- -ACCUUGACCUGGCGGAGUUGCGGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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