Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23034 | 5' | -58.7 | NC_005178.1 | + | 18060 | 0.67 | 0.350423 |
Target: 5'- cUGGAGCUGGGCaC-CCUgGGCaGCCgCAu -3' miRNA: 3'- -ACCUUGACCUG-GcGGAgUUG-CGGgGU- -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 15170 | 0.68 | 0.317741 |
Target: 5'- aGGuACUGGAcagcCCGCCUUggccgAGCGCUUCAc -3' miRNA: 3'- aCCuUGACCU----GGCGGAG-----UUGCGGGGU- -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 9008 | 0.68 | 0.294771 |
Target: 5'- aGGggUUGGACUGCUgcauuUCAcAC-CCCCAg -3' miRNA: 3'- aCCuuGACCUGGCGG-----AGU-UGcGGGGU- -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 20603 | 0.69 | 0.259398 |
Target: 5'- cUGGAGCUGGGugacaGCUUCAacggGCGCCCa- -3' miRNA: 3'- -ACCUUGACCUgg---CGGAGU----UGCGGGgu -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 28639 | 0.7 | 0.239884 |
Target: 5'- aGGGAUggcggGGAauGCCggCGACGCCCCc -3' miRNA: 3'- aCCUUGa----CCUggCGGa-GUUGCGGGGu -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 9742 | 0.7 | 0.221611 |
Target: 5'- aGGAGCaagGuGACCGCCUCGGCcggcucggcgaaGCCaCCGg -3' miRNA: 3'- aCCUUGa--C-CUGGCGGAGUUG------------CGG-GGU- -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 35525 | 0.71 | 0.206747 |
Target: 5'- cGGAACUGG-CCGggcggguacggcuuaCCUUGGCGCCCg- -3' miRNA: 3'- aCCUUGACCuGGC---------------GGAGUUGCGGGgu -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 15113 | 1.08 | 0.000326 |
Target: 5'- cUGGAACUGGACCGCCUCAACGCCCCAc -3' miRNA: 3'- -ACCUUGACCUGGCGGAGUUGCGGGGU- -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 579 | 0.66 | 0.4323 |
Target: 5'- cGGuucCUGGACCGa--CGGCGCCaCCGu -3' miRNA: 3'- aCCuu-GACCUGGCggaGUUGCGG-GGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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