Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23034 | 5' | -58.7 | NC_005178.1 | + | 27083 | 0.67 | 0.367637 |
Target: 5'- gGGAGCUGGACCGgagCAuUGCCgCGa -3' miRNA: 3'- aCCUUGACCUGGCggaGUuGCGGgGU- -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 27163 | 0.66 | 0.394528 |
Target: 5'- cGGGuuagccgcCUGGAUCGCggCAAUGCUCCGg -3' miRNA: 3'- aCCUu-------GACCUGGCGgaGUUGCGGGGU- -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 27513 | 0.66 | 0.416937 |
Target: 5'- aGGcugaugcGCUGGGCCGCCgugguggaacuuuugUCGcgcaGCGCCuCCAg -3' miRNA: 3'- aCCu------UGACCUGGCGG---------------AGU----UGCGG-GGU- -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 28153 | 0.67 | 0.380028 |
Target: 5'- aGGGGCUgacggucggcgccucGGcuguauCCGCCUCGgccgGCGCCCUg -3' miRNA: 3'- aCCUUGA---------------CCu-----GGCGGAGU----UGCGGGGu -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 28639 | 0.7 | 0.239884 |
Target: 5'- aGGGAUggcggGGAauGCCggCGACGCCCCc -3' miRNA: 3'- aCCUUGa----CCUggCGGa-GUUGCGGGGu -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 30938 | 0.67 | 0.358958 |
Target: 5'- aGGAGCUGGGCaaCGUCgUCAGCaCCCa- -3' miRNA: 3'- aCCUUGACCUG--GCGG-AGUUGcGGGgu -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 34094 | 0.66 | 0.39087 |
Target: 5'- aGGggUUgccaucccacaaacGGuuGCCGCCUCGACGCaaaaucuCCCAc -3' miRNA: 3'- aCCuuGA--------------CC--UGGCGGAGUUGCG-------GGGU- -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 34853 | 0.66 | 0.385424 |
Target: 5'- -cGGGCUGGAuuCCGCCcgaccgGACGCCUCGg -3' miRNA: 3'- acCUUGACCU--GGCGGag----UUGCGGGGU- -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 35525 | 0.71 | 0.206747 |
Target: 5'- cGGAACUGG-CCGggcggguacggcuuaCCUUGGCGCCCg- -3' miRNA: 3'- aCCUUGACCuGGC---------------GGAGUUGCGGGgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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