Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23034 | 5' | -58.7 | NC_005178.1 | + | 9742 | 0.7 | 0.221611 |
|
Target: 5'- aGGAGCaagGuGACCGCCUCGGCcggcucggcgaaGCCaCCGg -3' miRNA: 3'- aCCUUGa--C-CUGGCGGAGUUG------------CGG-GGU- -5' |
|||||||
| 23034 | 5' | -58.7 | NC_005178.1 | + | 9008 | 0.68 | 0.294771 |
|
Target: 5'- aGGggUUGGACUGCUgcauuUCAcAC-CCCCAg -3' miRNA: 3'- aCCuuGACCUGGCGG-----AGU-UGcGGGGU- -5' |
|||||||
| 23034 | 5' | -58.7 | NC_005178.1 | + | 5623 | 0.67 | 0.358958 |
|
Target: 5'- -uGAAUccgcGGAUCGCCUCGACGUagccgCCCAg -3' miRNA: 3'- acCUUGa---CCUGGCGGAGUUGCG-----GGGU- -5' |
|||||||
| 23034 | 5' | -58.7 | NC_005178.1 | + | 5308 | 0.76 | 0.083386 |
|
Target: 5'- cUGGAACUGG-CCGaCCUcCAGCGCCUgAa -3' miRNA: 3'- -ACCUUGACCuGGC-GGA-GUUGCGGGgU- -5' |
|||||||
| 23034 | 5' | -58.7 | NC_005178.1 | + | 4938 | 0.74 | 0.114296 |
|
Target: 5'- aGGAACUGG-CCGCCagCGGcCGCCCg- -3' miRNA: 3'- aCCUUGACCuGGCGGa-GUU-GCGGGgu -5' |
|||||||
| 23034 | 5' | -58.7 | NC_005178.1 | + | 4505 | 0.67 | 0.367637 |
|
Target: 5'- gUGcGAGCUGG-CCGagcggCAACGCUCCGg -3' miRNA: 3'- -AC-CUUGACCuGGCgga--GUUGCGGGGU- -5' |
|||||||
| 23034 | 5' | -58.7 | NC_005178.1 | + | 3013 | 0.68 | 0.309938 |
|
Target: 5'- cUGGAGCgcuuccUGGACCagGCCgagCGugGCGCCCUg -3' miRNA: 3'- -ACCUUG------ACCUGG--CGGa--GU--UGCGGGGu -5' |
|||||||
| 23034 | 5' | -58.7 | NC_005178.1 | + | 1743 | 0.75 | 0.10198 |
|
Target: 5'- -cGAACUGGGCCGCCUUgAGCGgaCCCGc -3' miRNA: 3'- acCUUGACCUGGCGGAG-UUGCg-GGGU- -5' |
|||||||
| 23034 | 5' | -58.7 | NC_005178.1 | + | 579 | 0.66 | 0.4323 |
|
Target: 5'- cGGuucCUGGACCGa--CGGCGCCaCCGu -3' miRNA: 3'- aCCuu-GACCUGGCggaGUUGCGG-GGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home