miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23035 5' -63 NC_005178.1 + 13881 0.71 0.098554
Target:  5'- gGCCAG-CGCCGCCCggcGUGaacgGGCCAgCg -3'
miRNA:   3'- -UGGUCaGCGGCGGG---UACg---CCGGUgGa -5'
23035 5' -63 NC_005178.1 + 14291 0.66 0.227967
Target:  5'- uGCCAGaCGCgGCCCuUGCcGGCgC-CCUg -3'
miRNA:   3'- -UGGUCaGCGgCGGGuACG-CCG-GuGGA- -5'
23035 5' -63 NC_005178.1 + 14638 0.66 0.222144
Target:  5'- --gGGUCGCCGCgcuggaguucuaCCAggaGCGcGCCGCCg -3'
miRNA:   3'- uggUCAGCGGCG------------GGUa--CGC-CGGUGGa -5'
23035 5' -63 NC_005178.1 + 15466 1.07 0.000145
Target:  5'- uACCAGUCGCCGCCCAUGCGGCCACCUa -3'
miRNA:   3'- -UGGUCAGCGGCGGGUACGCCGGUGGA- -5'
23035 5' -63 NC_005178.1 + 17665 0.66 0.259043
Target:  5'- gACCAcggCGaCGCCa--GCGGCCGCCg -3'
miRNA:   3'- -UGGUca-GCgGCGGguaCGCCGGUGGa -5'
23035 5' -63 NC_005178.1 + 17729 0.66 0.259043
Target:  5'- cGCUuGUCuaCGCCCGUcucGaCGGUCACCUg -3'
miRNA:   3'- -UGGuCAGcgGCGGGUA---C-GCCGGUGGA- -5'
23035 5' -63 NC_005178.1 + 21093 0.7 0.133671
Target:  5'- cGCCAag-GUCGUCCGUGUGcGCCGCCUg -3'
miRNA:   3'- -UGGUcagCGGCGGGUACGC-CGGUGGA- -5'
23035 5' -63 NC_005178.1 + 21198 0.66 0.240002
Target:  5'- gACC-GUCGCCGCCacgGaCGG-CACCg -3'
miRNA:   3'- -UGGuCAGCGGCGGguaC-GCCgGUGGa -5'
23035 5' -63 NC_005178.1 + 21314 0.67 0.196968
Target:  5'- cCCAcaCGCCGUCCGguucgacgccgaugaUGCGGCCgGCCg -3'
miRNA:   3'- uGGUcaGCGGCGGGU---------------ACGCCGG-UGGa -5'
23035 5' -63 NC_005178.1 + 22708 0.66 0.259043
Target:  5'- cGCCgGGUCGCUGCCgaGUGCcauagcGCCAUCg -3'
miRNA:   3'- -UGG-UCAGCGGCGGg-UACGc-----CGGUGGa -5'
23035 5' -63 NC_005178.1 + 24499 0.67 0.216447
Target:  5'- gACCGGcgCGCCGCCUu--CGGCCAg-- -3'
miRNA:   3'- -UGGUCa-GCGGCGGGuacGCCGGUgga -5'
23035 5' -63 NC_005178.1 + 25871 0.66 0.246216
Target:  5'- gUCAGUacCGCCaGgCCAUGCGGCaguuGCCg -3'
miRNA:   3'- uGGUCA--GCGG-CgGGUACGCCGg---UGGa -5'
23035 5' -63 NC_005178.1 + 26253 0.79 0.025629
Target:  5'- aGCCAG-CGCCacGCCCGcaGCGGCCACCg -3'
miRNA:   3'- -UGGUCaGCGG--CGGGUa-CGCCGGUGGa -5'
23035 5' -63 NC_005178.1 + 28243 0.67 0.20543
Target:  5'- uCCAGgccgcUGCCGCCUc-GCuGGCCGCCg -3'
miRNA:   3'- uGGUCa----GCGGCGGGuaCG-CCGGUGGa -5'
23035 5' -63 NC_005178.1 + 28274 0.7 0.123087
Target:  5'- -gCGG-CGCCGCUCAggaGCGuGCCGCCa -3'
miRNA:   3'- ugGUCaGCGGCGGGUa--CGC-CGGUGGa -5'
23035 5' -63 NC_005178.1 + 28798 0.76 0.039594
Target:  5'- aGCCagacgauguaauGGUCGCCGCCCuugccggcccacAUGuCGGCCGCCa -3'
miRNA:   3'- -UGG------------UCAGCGGCGGG------------UAC-GCCGGUGGa -5'
23035 5' -63 NC_005178.1 + 29046 0.68 0.174785
Target:  5'- uAUCGGU-GCCGCCCAgGCcaggggcgcgcagGGUCACCUg -3'
miRNA:   3'- -UGGUCAgCGGCGGGUaCG-------------CCGGUGGA- -5'
23035 5' -63 NC_005178.1 + 30234 0.67 0.1949
Target:  5'- aACUGGUCGUCGCaCCcauuUGaUGGCUACCa -3'
miRNA:   3'- -UGGUCAGCGGCG-GGu---AC-GCCGGUGGa -5'
23035 5' -63 NC_005178.1 + 31425 0.68 0.161694
Target:  5'- uCCAGUagcUGCCGCUC--GCGGuCCACCg -3'
miRNA:   3'- uGGUCA---GCGGCGGGuaCGCC-GGUGGa -5'
23035 5' -63 NC_005178.1 + 31902 0.68 0.166105
Target:  5'- cGCCGGgauggCGCUGCCgGUcauCGGCCAUCg -3'
miRNA:   3'- -UGGUCa----GCGGCGGgUAc--GCCGGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.