Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23035 | 5' | -63 | NC_005178.1 | + | 35924 | 0.67 | 0.216447 |
Target: 5'- gGCCAGUauucgGCCccaucgucagGCUCAUGCGGaaaCGCCUc -3' miRNA: 3'- -UGGUCAg----CGG----------CGGGUACGCCg--GUGGA- -5' |
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23035 | 5' | -63 | NC_005178.1 | + | 24499 | 0.67 | 0.216447 |
Target: 5'- gACCGGcgCGCCGCCUu--CGGCCAg-- -3' miRNA: 3'- -UGGUCa-GCGGCGGGuacGCCGGUgga -5' |
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23035 | 5' | -63 | NC_005178.1 | + | 35093 | 0.67 | 0.189815 |
Target: 5'- gACCGGacuacUCGCCGCCgAgcugccgcugGCGGCCGguCCg -3' miRNA: 3'- -UGGUC-----AGCGGCGGgUa---------CGCCGGU--GGa -5' |
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23035 | 5' | -63 | NC_005178.1 | + | 1525 | 0.67 | 0.194387 |
Target: 5'- gACCguuacgaGGUCGCCGCCCGcaUGuCGcGCCuguCCg -3' miRNA: 3'- -UGG-------UCAGCGGCGGGU--AC-GC-CGGu--GGa -5' |
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23035 | 5' | -63 | NC_005178.1 | + | 31902 | 0.68 | 0.166105 |
Target: 5'- cGCCGGgauggCGCUGCCgGUcauCGGCCAUCg -3' miRNA: 3'- -UGGUCa----GCGGCGGgUAc--GCCGGUGGa -5' |
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23035 | 5' | -63 | NC_005178.1 | + | 6499 | 0.68 | 0.179993 |
Target: 5'- gGCCAGgucacCGCCGCCaccgugcgCAUGCGGuUgGCCa -3' miRNA: 3'- -UGGUCa----GCGGCGG--------GUACGCC-GgUGGa -5' |
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23035 | 5' | -63 | NC_005178.1 | + | 29046 | 0.68 | 0.174785 |
Target: 5'- uAUCGGU-GCCGCCCAgGCcaggggcgcgcagGGUCACCUg -3' miRNA: 3'- -UGGUCAgCGGCGGGUaCG-------------CCGGUGGA- -5' |
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23035 | 5' | -63 | NC_005178.1 | + | 31425 | 0.68 | 0.161694 |
Target: 5'- uCCAGUagcUGCCGCUC--GCGGuCCACCg -3' miRNA: 3'- uGGUCA---GCGGCGGGuaCGCC-GGUGGa -5' |
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23035 | 5' | -63 | NC_005178.1 | + | 5356 | 0.68 | 0.161694 |
Target: 5'- gGCCAGUuccagcucgCGCCgGCCCugaacgGUGGCgGCCUc -3' miRNA: 3'- -UGGUCA---------GCGG-CGGGua----CGCCGgUGGA- -5' |
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23035 | 5' | -63 | NC_005178.1 | + | 13695 | 0.69 | 0.141187 |
Target: 5'- gUCAGUgGCCGCCU-UGauGCCGCCg -3' miRNA: 3'- uGGUCAgCGGCGGGuACgcCGGUGGa -5' |
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23035 | 5' | -63 | NC_005178.1 | + | 4546 | 0.69 | 0.153187 |
Target: 5'- aGCCGGaCGCCGCCCA-GUGGUucgagguuUACCc -3' miRNA: 3'- -UGGUCaGCGGCGGGUaCGCCG--------GUGGa -5' |
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23035 | 5' | -63 | NC_005178.1 | + | 37148 | 0.69 | 0.144693 |
Target: 5'- cGCCAgGUCGCCGaCCgggacgccagcgaGUGCuGCCGCCUc -3' miRNA: 3'- -UGGU-CAGCGGCgGG-------------UACGcCGGUGGA- -5' |
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23035 | 5' | -63 | NC_005178.1 | + | 28274 | 0.7 | 0.123087 |
Target: 5'- -gCGG-CGCCGCUCAggaGCGuGCCGCCa -3' miRNA: 3'- ugGUCaGCGGCGGGUa--CGC-CGGUGGa -5' |
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23035 | 5' | -63 | NC_005178.1 | + | 9525 | 0.7 | 0.119735 |
Target: 5'- cGCCAG-CGCCGCCUGgcGCGGgaaCGCCa -3' miRNA: 3'- -UGGUCaGCGGCGGGUa-CGCCg--GUGGa -5' |
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23035 | 5' | -63 | NC_005178.1 | + | 9662 | 0.7 | 0.130053 |
Target: 5'- gGCCGGuggcuUCGCCGagCCGgccgagGCGGUCACCUu -3' miRNA: 3'- -UGGUC-----AGCGGCg-GGUa-----CGCCGGUGGA- -5' |
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23035 | 5' | -63 | NC_005178.1 | + | 21093 | 0.7 | 0.133671 |
Target: 5'- cGCCAag-GUCGUCCGUGUGcGCCGCCUg -3' miRNA: 3'- -UGGUcagCGGCGGGUACGC-CGGUGGA- -5' |
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23035 | 5' | -63 | NC_005178.1 | + | 2724 | 0.71 | 0.104216 |
Target: 5'- uGCUGaaCGCCGCCCugggcgagGUGGCCACCa -3' miRNA: 3'- -UGGUcaGCGGCGGGua------CGCCGGUGGa -5' |
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23035 | 5' | -63 | NC_005178.1 | + | 13881 | 0.71 | 0.098554 |
Target: 5'- gGCCAG-CGCCGCCCggcGUGaacgGGCCAgCg -3' miRNA: 3'- -UGGUCaGCGGCGGG---UACg---CCGGUgGa -5' |
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23035 | 5' | -63 | NC_005178.1 | + | 4925 | 0.72 | 0.092663 |
Target: 5'- gACCAGaUCGCCGaggaacuggccgCCA-GCGGCCGCCc -3' miRNA: 3'- -UGGUC-AGCGGCg-----------GGUaCGCCGGUGGa -5' |
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23035 | 5' | -63 | NC_005178.1 | + | 32219 | 0.73 | 0.068286 |
Target: 5'- gGCCAucGaCGCCGCCC-UG-GGCCGCCUg -3' miRNA: 3'- -UGGU--CaGCGGCGGGuACgCCGGUGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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