miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23035 5' -63 NC_005178.1 + 35093 0.67 0.189815
Target:  5'- gACCGGacuacUCGCCGCCgAgcugccgcugGCGGCCGguCCg -3'
miRNA:   3'- -UGGUC-----AGCGGCGGgUa---------CGCCGGU--GGa -5'
23035 5' -63 NC_005178.1 + 1525 0.67 0.194387
Target:  5'- gACCguuacgaGGUCGCCGCCCGcaUGuCGcGCCuguCCg -3'
miRNA:   3'- -UGG-------UCAGCGGCGGGU--AC-GC-CGGu--GGa -5'
23035 5' -63 NC_005178.1 + 2821 0.67 0.1949
Target:  5'- gGCCAGcugCGucuccuggcggaCCGCCUugGUGGCCACCUc -3'
miRNA:   3'- -UGGUCa--GC------------GGCGGGuaCGCCGGUGGA- -5'
23035 5' -63 NC_005178.1 + 5802 0.67 0.1949
Target:  5'- uGCCcGagGCCGCCaccgAUGCGGCgAUCUg -3'
miRNA:   3'- -UGGuCagCGGCGGg---UACGCCGgUGGA- -5'
23035 5' -63 NC_005178.1 + 30234 0.67 0.1949
Target:  5'- aACUGGUCGUCGCaCCcauuUGaUGGCUACCa -3'
miRNA:   3'- -UGGUCAGCGGCG-GGu---AC-GCCGGUGGa -5'
23035 5' -63 NC_005178.1 + 21314 0.67 0.196968
Target:  5'- cCCAcaCGCCGUCCGguucgacgccgaugaUGCGGCCgGCCg -3'
miRNA:   3'- uGGUcaGCGGCGGGU---------------ACGCCGG-UGGa -5'
23035 5' -63 NC_005178.1 + 1534 0.67 0.20543
Target:  5'- gACCAGuUCGCUGaCCUggGCGGCguaguugcacuCACCa -3'
miRNA:   3'- -UGGUC-AGCGGC-GGGuaCGCCG-----------GUGGa -5'
23035 5' -63 NC_005178.1 + 28243 0.67 0.20543
Target:  5'- uCCAGgccgcUGCCGCCUc-GCuGGCCGCCg -3'
miRNA:   3'- uGGUCa----GCGGCGGGuaCG-CCGGUGGa -5'
23035 5' -63 NC_005178.1 + 35924 0.67 0.216447
Target:  5'- gGCCAGUauucgGCCccaucgucagGCUCAUGCGGaaaCGCCUc -3'
miRNA:   3'- -UGGUCAg----CGG----------CGGGUACGCCg--GUGGA- -5'
23035 5' -63 NC_005178.1 + 24499 0.67 0.216447
Target:  5'- gACCGGcgCGCCGCCUu--CGGCCAg-- -3'
miRNA:   3'- -UGGUCa-GCGGCGGGuacGCCGGUgga -5'
23035 5' -63 NC_005178.1 + 4147 0.66 0.222144
Target:  5'- ---uGUCGuaGCCCA--CGGCCACCUg -3'
miRNA:   3'- ugguCAGCggCGGGUacGCCGGUGGA- -5'
23035 5' -63 NC_005178.1 + 14638 0.66 0.222144
Target:  5'- --gGGUCGCCGCgcuggaguucuaCCAggaGCGcGCCGCCg -3'
miRNA:   3'- uggUCAGCGGCG------------GGUa--CGC-CGGUGGa -5'
23035 5' -63 NC_005178.1 + 14291 0.66 0.227967
Target:  5'- uGCCAGaCGCgGCCCuUGCcGGCgC-CCUg -3'
miRNA:   3'- -UGGUCaGCGgCGGGuACG-CCG-GuGGA- -5'
23035 5' -63 NC_005178.1 + 11152 0.66 0.234522
Target:  5'- cGCCcuGGcCGCCGCCCugggcuuccugguccUGUGGCC-CCg -3'
miRNA:   3'- -UGG--UCaGCGGCGGGu--------------ACGCCGGuGGa -5'
23035 5' -63 NC_005178.1 + 5870 0.66 0.240002
Target:  5'- cACCGGcccUCgGCCGCCCAUcguccagcGCGagacgcGCCGCCa -3'
miRNA:   3'- -UGGUC---AG-CGGCGGGUA--------CGC------CGGUGGa -5'
23035 5' -63 NC_005178.1 + 21198 0.66 0.240002
Target:  5'- gACC-GUCGCCGCCacgGaCGG-CACCg -3'
miRNA:   3'- -UGGuCAGCGGCGGguaC-GCCgGUGGa -5'
23035 5' -63 NC_005178.1 + 25871 0.66 0.246216
Target:  5'- gUCAGUacCGCCaGgCCAUGCGGCaguuGCCg -3'
miRNA:   3'- uGGUCA--GCGG-CgGGUACGCCGg---UGGa -5'
23035 5' -63 NC_005178.1 + 12356 0.66 0.252562
Target:  5'- cGCCcGUCaacguGCCGCCCAggccacuaccgGCGGCCuuggcucaACCg -3'
miRNA:   3'- -UGGuCAG-----CGGCGGGUa----------CGCCGG--------UGGa -5'
23035 5' -63 NC_005178.1 + 9582 0.66 0.252562
Target:  5'- cGCCg--CGCUGCgCUggGCGGUCGCCg -3'
miRNA:   3'- -UGGucaGCGGCG-GGuaCGCCGGUGGa -5'
23035 5' -63 NC_005178.1 + 9052 0.66 0.252562
Target:  5'- uGCCg--CGCCGCgCucGCGGUCACCg -3'
miRNA:   3'- -UGGucaGCGGCGgGuaCGCCGGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.