Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23036 | 5' | -56.9 | NC_005178.1 | + | 25173 | 0.66 | 0.482011 |
Target: 5'- uGAUGGCGgucaaCCAUGGCuucGCCGGGg- -3' miRNA: 3'- -UUACUGCaac--GGUACCGc--CGGUCCag -5' |
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23036 | 5' | -56.9 | NC_005178.1 | + | 24110 | 0.66 | 0.461089 |
Target: 5'- gGGUGAUGUUGaCgGUGGCGGUCuugccgauAGGg- -3' miRNA: 3'- -UUACUGCAAC-GgUACCGCCGG--------UCCag -5' |
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23036 | 5' | -56.9 | NC_005178.1 | + | 9591 | 0.66 | 0.450808 |
Target: 5'- -uUGGCGUUcccgcGCCA-GGCGGCgCuggcGGUCu -3' miRNA: 3'- uuACUGCAA-----CGGUaCCGCCG-Gu---CCAG- -5' |
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23036 | 5' | -56.9 | NC_005178.1 | + | 35111 | 0.66 | 0.450808 |
Target: 5'- --cGA-GcUGCCGcUGGCGGCC-GGUCc -3' miRNA: 3'- uuaCUgCaACGGU-ACCGCCGGuCCAG- -5' |
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23036 | 5' | -56.9 | NC_005178.1 | + | 5893 | 0.66 | 0.450808 |
Target: 5'- -uUGAgGgcGUaAUGGCGGCCguugcGGGUCa -3' miRNA: 3'- uuACUgCaaCGgUACCGCCGG-----UCCAG- -5' |
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23036 | 5' | -56.9 | NC_005178.1 | + | 25346 | 0.66 | 0.430634 |
Target: 5'- -cUGGCGaccaUGCCAgccaGGCuGGCCGGGa- -3' miRNA: 3'- uuACUGCa---ACGGUa---CCG-CCGGUCCag -5' |
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23036 | 5' | -56.9 | NC_005178.1 | + | 12921 | 0.66 | 0.429639 |
Target: 5'- --gGugGUggGCUggaggacGUGGCGcGCCAGGUg -3' miRNA: 3'- uuaCugCAa-CGG-------UACCGC-CGGUCCAg -5' |
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23036 | 5' | -56.9 | NC_005178.1 | + | 19826 | 0.66 | 0.427654 |
Target: 5'- --aGGCGguucuucuucaugccGCCAUGGUGGCgAcGGUCg -3' miRNA: 3'- uuaCUGCaa-------------CGGUACCGCCGgU-CCAG- -5' |
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23036 | 5' | -56.9 | NC_005178.1 | + | 31896 | 0.67 | 0.410999 |
Target: 5'- --cGACGUcGCCGggaUGGCGcuGCC-GGUCa -3' miRNA: 3'- uuaCUGCAaCGGU---ACCGC--CGGuCCAG- -5' |
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23036 | 5' | -56.9 | NC_005178.1 | + | 21260 | 0.67 | 0.391929 |
Target: 5'- cGGUGcCGU--CCGUGGCGGCgAcGGUCu -3' miRNA: 3'- -UUACuGCAacGGUACCGCCGgU-CCAG- -5' |
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23036 | 5' | -56.9 | NC_005178.1 | + | 15772 | 0.68 | 0.373444 |
Target: 5'- --aGGCGUUGCgc-GGCGGCUcgauGGUCc -3' miRNA: 3'- uuaCUGCAACGguaCCGCCGGu---CCAG- -5' |
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23036 | 5' | -56.9 | NC_005178.1 | + | 20445 | 0.68 | 0.373444 |
Target: 5'- --gGGCGUccaggGCCGgcuucagGGCGGUCAGGg- -3' miRNA: 3'- uuaCUGCAa----CGGUa------CCGCCGGUCCag -5' |
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23036 | 5' | -56.9 | NC_005178.1 | + | 5009 | 0.68 | 0.350314 |
Target: 5'- cGAUGaucaGCGggcgGCCGcUGGCGGCCAguuccucggcgaucuGGUCg -3' miRNA: 3'- -UUAC----UGCaa--CGGU-ACCGCCGGU---------------CCAG- -5' |
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23036 | 5' | -56.9 | NC_005178.1 | + | 10235 | 0.69 | 0.321634 |
Target: 5'- --aGACcugGCCAUGGCGGCuCcuGUCg -3' miRNA: 3'- uuaCUGcaaCGGUACCGCCG-GucCAG- -5' |
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23036 | 5' | -56.9 | NC_005178.1 | + | 5705 | 0.69 | 0.321634 |
Target: 5'- gGAUGGC-UUGCCAUcGGCGuuCAGGUUc -3' miRNA: 3'- -UUACUGcAACGGUA-CCGCcgGUCCAG- -5' |
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23036 | 5' | -56.9 | NC_005178.1 | + | 2897 | 0.69 | 0.312739 |
Target: 5'- -cUGAUGcUGgaCAUGGCgcgccucGGCCAGGUCg -3' miRNA: 3'- uuACUGCaACg-GUACCG-------CCGGUCCAG- -5' |
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23036 | 5' | -56.9 | NC_005178.1 | + | 30159 | 0.69 | 0.290186 |
Target: 5'- cGUGGCGUcgGCUAUacgGGCGGCCAGu-- -3' miRNA: 3'- uUACUGCAa-CGGUA---CCGCCGGUCcag -5' |
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23036 | 5' | -56.9 | NC_005178.1 | + | 36140 | 0.69 | 0.290186 |
Target: 5'- aGGUGGCGaacgagGCCAcgccUGcUGGCCAGGUCa -3' miRNA: 3'- -UUACUGCaa----CGGU----ACcGCCGGUCCAG- -5' |
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23036 | 5' | -56.9 | NC_005178.1 | + | 11883 | 0.7 | 0.268219 |
Target: 5'- gAAUGAuCGcgGUCAccagGGCGGCCAGGg- -3' miRNA: 3'- -UUACU-GCaaCGGUa---CCGCCGGUCCag -5' |
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23036 | 5' | -56.9 | NC_005178.1 | + | 28131 | 0.7 | 0.268219 |
Target: 5'- -cUGGCGggucGCCAUccUGGCCAGGUCg -3' miRNA: 3'- uuACUGCaa--CGGUAccGCCGGUCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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