Results 21 - 26 of 26 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 23036 | 5' | -56.9 | NC_005178.1 | + | 28373 | 0.7 | 0.261201 |
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Target: 5'- --cGGCuucGCgGgUGGCGGCCAGGUCc -3' miRNA: 3'- uuaCUGcaaCGgU-ACCGCCGGUCCAG- -5' |
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| 23036 | 5' | -56.9 | NC_005178.1 | + | 26367 | 0.7 | 0.254333 |
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Target: 5'- gAGUGACGccGCCAUGGCGGaCAGu-- -3' miRNA: 3'- -UUACUGCaaCGGUACCGCCgGUCcag -5' |
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| 23036 | 5' | -56.9 | NC_005178.1 | + | 26703 | 0.71 | 0.228337 |
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Target: 5'- --aGAcCGUUGCCggGGUGGCCAaGGg- -3' miRNA: 3'- uuaCU-GCAACGGuaCCGCCGGU-CCag -5' |
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| 23036 | 5' | -56.9 | NC_005178.1 | + | 25838 | 0.71 | 0.227717 |
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Target: 5'- -cUGACGccaugGCCGUGGcCGGCauuucggCAGGUCa -3' miRNA: 3'- uuACUGCaa---CGGUACC-GCCG-------GUCCAG- -5' |
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| 23036 | 5' | -56.9 | NC_005178.1 | + | 27938 | 0.75 | 0.122724 |
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Target: 5'- -uUGACccaGUUGCCcugGGCGGCCuggAGGUCg -3' miRNA: 3'- uuACUG---CAACGGua-CCGCCGG---UCCAG- -5' |
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| 23036 | 5' | -56.9 | NC_005178.1 | + | 16629 | 1.07 | 0.000407 |
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Target: 5'- uAAUGACGUUGCCAUGGCGGCCAGGUCg -3' miRNA: 3'- -UUACUGCAACGGUACCGCCGGUCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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