Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23036 | 5' | -56.9 | NC_005178.1 | + | 25346 | 0.66 | 0.430634 |
Target: 5'- -cUGGCGaccaUGCCAgccaGGCuGGCCGGGa- -3' miRNA: 3'- uuACUGCa---ACGGUa---CCG-CCGGUCCag -5' |
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23036 | 5' | -56.9 | NC_005178.1 | + | 5893 | 0.66 | 0.450808 |
Target: 5'- -uUGAgGgcGUaAUGGCGGCCguugcGGGUCa -3' miRNA: 3'- uuACUgCaaCGgUACCGCCGG-----UCCAG- -5' |
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23036 | 5' | -56.9 | NC_005178.1 | + | 35111 | 0.66 | 0.450808 |
Target: 5'- --cGA-GcUGCCGcUGGCGGCC-GGUCc -3' miRNA: 3'- uuaCUgCaACGGU-ACCGCCGGuCCAG- -5' |
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23036 | 5' | -56.9 | NC_005178.1 | + | 9591 | 0.66 | 0.450808 |
Target: 5'- -uUGGCGUUcccgcGCCA-GGCGGCgCuggcGGUCu -3' miRNA: 3'- uuACUGCAA-----CGGUaCCGCCG-Gu---CCAG- -5' |
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23036 | 5' | -56.9 | NC_005178.1 | + | 24110 | 0.66 | 0.461089 |
Target: 5'- gGGUGAUGUUGaCgGUGGCGGUCuugccgauAGGg- -3' miRNA: 3'- -UUACUGCAAC-GgUACCGCCGG--------UCCag -5' |
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23036 | 5' | -56.9 | NC_005178.1 | + | 25173 | 0.66 | 0.482011 |
Target: 5'- uGAUGGCGgucaaCCAUGGCuucGCCGGGg- -3' miRNA: 3'- -UUACUGCaac--GGUACCGc--CGGUCCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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