Results 1 - 20 of 53 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 14712 | 0.66 | 0.291184 |
Target: 5'- cGGC-GGCgC-GCuCCUGGuagaacUCCAGCGCg -3' miRNA: 3'- -CCGaCCG-GuCGuGGACC------AGGUCGCGa -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 23507 | 0.66 | 0.276918 |
Target: 5'- gGGCgcccUGGCCGucGC-CCUGGgcgUCGGCGUa -3' miRNA: 3'- -CCG----ACCGGU--CGuGGACCa--GGUCGCGa -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 18153 | 0.66 | 0.276918 |
Target: 5'- gGGCUgGGCCAgGCGCUgcggcaGGUucgCCAGCuGCUc -3' miRNA: 3'- -CCGA-CCGGU-CGUGGa-----CCA---GGUCG-CGA- -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 5406 | 0.66 | 0.272748 |
Target: 5'- gGGCUcggGGCC-GCACCgguguacagcuccaGGUUCAgGCGCUg -3' miRNA: 3'- -CCGA---CCGGuCGUGGa-------------CCAGGU-CGCGA- -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 28309 | 0.66 | 0.263215 |
Target: 5'- cGGC-GGCCAGCgaggcggcagcgGCCUGGauagcggCGGCGCc -3' miRNA: 3'- -CCGaCCGGUCG------------UGGACCag-----GUCGCGa -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 25364 | 0.66 | 0.256573 |
Target: 5'- aGGCUGGCCGGgAgCU-GUCCGGUu-- -3' miRNA: 3'- -CCGACCGGUCgUgGAcCAGGUCGcga -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 32068 | 0.66 | 0.252654 |
Target: 5'- cGGCgugGGUCGGCACCcauagcggcuucugcUGG-CC-GCGCa -3' miRNA: 3'- -CCGa--CCGGUCGUGG---------------ACCaGGuCGCGa -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 2906 | 0.66 | 0.250069 |
Target: 5'- cGGUgcgGGCCAuCAUCaGGUCUAGgGCg -3' miRNA: 3'- -CCGa--CCGGUcGUGGaCCAGGUCgCGa -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 34497 | 0.67 | 0.243701 |
Target: 5'- aGCUGGCuCGGCGCCagggaGGUCgAGC-Cg -3' miRNA: 3'- cCGACCG-GUCGUGGa----CCAGgUCGcGa -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 27799 | 0.67 | 0.243701 |
Target: 5'- -aCUGGCU--CGCCaGGUCCAgGCGCUg -3' miRNA: 3'- ccGACCGGucGUGGaCCAGGU-CGCGA- -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 12217 | 0.67 | 0.243701 |
Target: 5'- cGGCUcuuuuCCAGCGCCUGG-CCAaGCGg- -3' miRNA: 3'- -CCGAcc---GGUCGUGGACCaGGU-CGCga -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 17945 | 0.67 | 0.237469 |
Target: 5'- cGCUGGC--GUACCgGGUCCAGgaGCa -3' miRNA: 3'- cCGACCGguCGUGGaCCAGGUCg-CGa -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 31307 | 0.67 | 0.237469 |
Target: 5'- aGCgccgGGCUAuGCGCCUGGcgCC-GCGCc -3' miRNA: 3'- cCGa---CCGGU-CGUGGACCa-GGuCGCGa -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 12657 | 0.67 | 0.227181 |
Target: 5'- cGGC-GGCCGGCgcgcuggcgggugGCCUGGuugccugcggccugcUCgCGGCGCg -3' miRNA: 3'- -CCGaCCGGUCG-------------UGGACC---------------AG-GUCGCGa -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 25865 | 0.67 | 0.221889 |
Target: 5'- cGGCaGGUCAGUACCgccaGGccaugcggcaguugCCGGCGCa -3' miRNA: 3'- -CCGaCCGGUCGUGGa---CCa-------------GGUCGCGa -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 1487 | 0.67 | 0.220148 |
Target: 5'- cGCgGGCCGGCugCggaacaucgaagauGUCCAGCGUUc -3' miRNA: 3'- cCGaCCGGUCGugGac------------CAGGUCGCGA- -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 16801 | 0.67 | 0.21957 |
Target: 5'- uGCUGGCCAGCcuGCC-GGcCCAGgacaUGCa -3' miRNA: 3'- cCGACCGGUCG--UGGaCCaGGUC----GCGa -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 20066 | 0.67 | 0.213865 |
Target: 5'- gGGCUGGCCGuuCugCUcuuucuuuagGGUCUGGUGCUc -3' miRNA: 3'- -CCGACCGGUc-GugGA----------CCAGGUCGCGA- -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 7726 | 0.67 | 0.213301 |
Target: 5'- aGCcGGCCgaagaccugaagaAGCGCCUGGcgguccUCCAGgGCg -3' miRNA: 3'- cCGaCCGG-------------UCGUGGACC------AGGUCgCGa -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 8800 | 0.68 | 0.205001 |
Target: 5'- cGCUGaGCC-GCACCaGGUcggcaagaaagucgcCCGGCGCg -3' miRNA: 3'- cCGAC-CGGuCGUGGaCCA---------------GGUCGCGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home