miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23037 3' -61.8 NC_005178.1 + 16849 1.08 0.000127
Target:  5'- aGGCUGGCCAGCACCUGGUCCAGCGCUu -3'
miRNA:   3'- -CCGACCGGUCGUGGACCAGGUCGCGA- -5'
23037 3' -61.8 NC_005178.1 + 35051 0.88 0.005944
Target:  5'- aGGCUGGUCGGCGCCUcGG-CCAGCGCg -3'
miRNA:   3'- -CCGACCGGUCGUGGA-CCaGGUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 13000 0.79 0.029396
Target:  5'- aGGCcGGCCAGCACCUGGcgcgccacguccUCCAGCcCa -3'
miRNA:   3'- -CCGaCCGGUCGUGGACC------------AGGUCGcGa -5'
23037 3' -61.8 NC_005178.1 + 17879 0.77 0.038271
Target:  5'- cGCUcGGCCuuguuguacAGCACCUGGUCCaucagGGCGCUc -3'
miRNA:   3'- cCGA-CCGG---------UCGUGGACCAGG-----UCGCGA- -5'
23037 3' -61.8 NC_005178.1 + 9993 0.75 0.062552
Target:  5'- cGCUGGaguuccaCCAGUACCUGGUCaaucuGGCGCg -3'
miRNA:   3'- cCGACC-------GGUCGUGGACCAGg----UCGCGa -5'
23037 3' -61.8 NC_005178.1 + 13188 0.75 0.05904
Target:  5'- aGCUGGCCaggcgcuggAGCACCUccauagcGGUggCCAGCGCUg -3'
miRNA:   3'- cCGACCGG---------UCGUGGA-------CCA--GGUCGCGA- -5'
23037 3' -61.8 NC_005178.1 + 11865 0.73 0.078952
Target:  5'- gGGC-GGCCAGgGuguCCUGGUCCAuGUGCa -3'
miRNA:   3'- -CCGaCCGGUCgU---GGACCAGGU-CGCGa -5'
23037 3' -61.8 NC_005178.1 + 18082 0.73 0.078952
Target:  5'- aGCUGGCgaaccugccgCAGCGCCUGGcCCAGCccGCc -3'
miRNA:   3'- cCGACCG----------GUCGUGGACCaGGUCG--CGa -5'
23037 3' -61.8 NC_005178.1 + 13087 0.72 0.099137
Target:  5'- aGGCUGGCCAGCAgCUGcaccuUCaCGGCGg- -3'
miRNA:   3'- -CCGACCGGUCGUgGACc----AG-GUCGCga -5'
23037 3' -61.8 NC_005178.1 + 4445 0.72 0.091052
Target:  5'- cGCUcGGCCuGCACUucaagGGUCgCGGCGCUg -3'
miRNA:   3'- cCGA-CCGGuCGUGGa----CCAG-GUCGCGA- -5'
23037 3' -61.8 NC_005178.1 + 35467 0.72 0.101979
Target:  5'- uGGC-GGCCAGCGCCgGGgCCAGUugGCc -3'
miRNA:   3'- -CCGaCCGGUCGUGGaCCaGGUCG--CGa -5'
23037 3' -61.8 NC_005178.1 + 13880 0.72 0.109118
Target:  5'- ---aGGCCAGCGCCgcccggcgugaacgGG-CCAGCGCg -3'
miRNA:   3'- ccgaCCGGUCGUGGa-------------CCaGGUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 28261 0.72 0.104603
Target:  5'- cGCUGGCCGcCGCCaaUGGUgucaguggggugaCCGGCGCUg -3'
miRNA:   3'- cCGACCGGUcGUGG--ACCA-------------GGUCGCGA- -5'
23037 3' -61.8 NC_005178.1 + 16715 0.72 0.091052
Target:  5'- -aCUGaGCCGGCGcCCUGGUCCucgcaucgcuGCGCUg -3'
miRNA:   3'- ccGAC-CGGUCGU-GGACCAGGu---------CGCGA- -5'
23037 3' -61.8 NC_005178.1 + 28459 0.71 0.117378
Target:  5'- cGCUGGUCGGUguGCCUGGUCCcuggaccuGGcCGCc -3'
miRNA:   3'- cCGACCGGUCG--UGGACCAGG--------UC-GCGa -5'
23037 3' -61.8 NC_005178.1 + 10411 0.7 0.146576
Target:  5'- aGCUcGGCCAGCGCa--GcCCGGCGCg -3'
miRNA:   3'- cCGA-CCGGUCGUGgacCaGGUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 13110 0.7 0.138708
Target:  5'- cGCUGGCCAcCGCUaUGGaggugcUCCAGCGCc -3'
miRNA:   3'- cCGACCGGUcGUGG-ACC------AGGUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 13038 0.7 0.138708
Target:  5'- uGCUGGCCAGCcuggccgauGCCUacaacaagacGGUC-AGCGCg -3'
miRNA:   3'- cCGACCGGUCG---------UGGA----------CCAGgUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 12044 0.69 0.172672
Target:  5'- cGGCuUGGCCcuGGCccuguuCCUGGUgaugguugcgaCCAGCGCc -3'
miRNA:   3'- -CCG-ACCGG--UCGu-----GGACCA-----------GGUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 26714 0.69 0.163542
Target:  5'- gGGgUGGCCaagGGCGCCUGGgacgaaaugCuCGGCGUg -3'
miRNA:   3'- -CCgACCGG---UCGUGGACCa--------G-GUCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.