Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23041 | 5' | -61.5 | NC_005178.1 | + | 16682 | 0.66 | 0.318515 |
Target: 5'- cCUGGGCgaUCAggccggcgcaggcaUCGCCCaacugaGCCGgcgcCCUGGUc -3' miRNA: 3'- -GACCCGa-AGU--------------AGCGGG------CGGC----GGACCG- -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 5120 | 0.66 | 0.3162 |
Target: 5'- gCUGGGUUccggcccagccagugUCucuggaggaCGCCCGCaaCCUGGCg -3' miRNA: 3'- -GACCCGA---------------AGua-------GCGGGCGgcGGACCG- -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 24202 | 0.66 | 0.3162 |
Target: 5'- -gGGGaguaccucgcccgUCAcggaGCCCGCCGCCUuGGUc -3' miRNA: 3'- gaCCCga-----------AGUag--CGGGCGGCGGA-CCG- -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 12675 | 0.66 | 0.313132 |
Target: 5'- -cGGGUggccUgGUUGCCUGCgGCCUGcucGCg -3' miRNA: 3'- gaCCCGa---AgUAGCGGGCGgCGGAC---CG- -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 22566 | 0.66 | 0.313132 |
Target: 5'- cCUGGGUgUCGUUGUCCGaCGCggacGGCu -3' miRNA: 3'- -GACCCGaAGUAGCGGGCgGCGga--CCG- -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 35255 | 0.66 | 0.313132 |
Target: 5'- -cGGaCUaucUCAUCGUCCacgacuGCgGCCUGGCc -3' miRNA: 3'- gaCCcGA---AGUAGCGGG------CGgCGGACCG- -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 10355 | 0.66 | 0.305562 |
Target: 5'- -cGGGCUg---CGCUgGCCGagCUGGUg -3' miRNA: 3'- gaCCCGAaguaGCGGgCGGCg-GACCG- -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 6885 | 0.66 | 0.301087 |
Target: 5'- -gGGGCgagcguccgcccgucUUCGUCcagcuGCUCGCCGCUgaggUGGCc -3' miRNA: 3'- gaCCCG---------------AAGUAG-----CGGGCGGCGG----ACCG- -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 11148 | 0.66 | 0.290844 |
Target: 5'- -cGGGCgccc-UGgCCGCCGCCcugGGCu -3' miRNA: 3'- gaCCCGaaguaGCgGGCGGCGGa--CCG- -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 26724 | 0.66 | 0.283695 |
Target: 5'- -aGGGUgcccagguucUCGacgaucuggcUCGCCCGCUcguccauuGCCUGGCu -3' miRNA: 3'- gaCCCGa---------AGU----------AGCGGGCGG--------CGGACCG- -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 10160 | 0.66 | 0.283695 |
Target: 5'- -aGGcGCUuaUCAUCGaCaggaGCCGCCaUGGCc -3' miRNA: 3'- gaCC-CGA--AGUAGCgGg---CGGCGG-ACCG- -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 6799 | 0.66 | 0.276687 |
Target: 5'- aUGGGgaUCAgUGCUCGgCGCaUGGCg -3' miRNA: 3'- gACCCgaAGUaGCGGGCgGCGgACCG- -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 20020 | 0.66 | 0.276687 |
Target: 5'- --cGGCcagcCcgCGCCCGCUGCC-GGCc -3' miRNA: 3'- gacCCGaa--GuaGCGGGCGGCGGaCCG- -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 34853 | 0.67 | 0.250033 |
Target: 5'- -cGGGCUggAUucCGCCCGaccggaCGCCUcgGGCg -3' miRNA: 3'- gaCCCGAagUA--GCGGGCg-----GCGGA--CCG- -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 27177 | 0.67 | 0.250033 |
Target: 5'- --aGGCgUUCGUCGUUCggguuaGCCGCCUGGa -3' miRNA: 3'- gacCCG-AAGUAGCGGG------CGGCGGACCg -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 30539 | 0.67 | 0.243709 |
Target: 5'- -cGGGCUgugcaaCAUgGCCUuCCucgcGCCUGGCg -3' miRNA: 3'- gaCCCGAa-----GUAgCGGGcGG----CGGACCG- -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 5819 | 0.67 | 0.237519 |
Target: 5'- gCUGGGCgacacggUCGU-GCCCgagGCCGCCaccgaugcGGCg -3' miRNA: 3'- -GACCCGa------AGUAgCGGG---CGGCGGa-------CCG- -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 12925 | 0.68 | 0.231461 |
Target: 5'- gUGGGCUggaggaCGUgGCgCGCCaggugcuggccgGCCUGGUg -3' miRNA: 3'- gACCCGAa-----GUAgCGgGCGG------------CGGACCG- -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 16049 | 0.68 | 0.231461 |
Target: 5'- -cGGGCUguucCGCgUGCUGgCCUGGCc -3' miRNA: 3'- gaCCCGAaguaGCGgGCGGC-GGACCG- -5' |
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23041 | 5' | -61.5 | NC_005178.1 | + | 36395 | 0.68 | 0.214065 |
Target: 5'- --cGGCga-AUCGUCCGCUGUCgGGCa -3' miRNA: 3'- gacCCGaagUAGCGGGCGGCGGaCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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