miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23041 5' -61.5 NC_005178.1 + 16682 0.66 0.318515
Target:  5'- cCUGGGCgaUCAggccggcgcaggcaUCGCCCaacugaGCCGgcgcCCUGGUc -3'
miRNA:   3'- -GACCCGa-AGU--------------AGCGGG------CGGC----GGACCG- -5'
23041 5' -61.5 NC_005178.1 + 24202 0.66 0.3162
Target:  5'- -gGGGaguaccucgcccgUCAcggaGCCCGCCGCCUuGGUc -3'
miRNA:   3'- gaCCCga-----------AGUag--CGGGCGGCGGA-CCG- -5'
23041 5' -61.5 NC_005178.1 + 5120 0.66 0.3162
Target:  5'- gCUGGGUUccggcccagccagugUCucuggaggaCGCCCGCaaCCUGGCg -3'
miRNA:   3'- -GACCCGA---------------AGua-------GCGGGCGgcGGACCG- -5'
23041 5' -61.5 NC_005178.1 + 35255 0.66 0.313132
Target:  5'- -cGGaCUaucUCAUCGUCCacgacuGCgGCCUGGCc -3'
miRNA:   3'- gaCCcGA---AGUAGCGGG------CGgCGGACCG- -5'
23041 5' -61.5 NC_005178.1 + 12675 0.66 0.313132
Target:  5'- -cGGGUggccUgGUUGCCUGCgGCCUGcucGCg -3'
miRNA:   3'- gaCCCGa---AgUAGCGGGCGgCGGAC---CG- -5'
23041 5' -61.5 NC_005178.1 + 22566 0.66 0.313132
Target:  5'- cCUGGGUgUCGUUGUCCGaCGCggacGGCu -3'
miRNA:   3'- -GACCCGaAGUAGCGGGCgGCGga--CCG- -5'
23041 5' -61.5 NC_005178.1 + 10355 0.66 0.305562
Target:  5'- -cGGGCUg---CGCUgGCCGagCUGGUg -3'
miRNA:   3'- gaCCCGAaguaGCGGgCGGCg-GACCG- -5'
23041 5' -61.5 NC_005178.1 + 6885 0.66 0.301087
Target:  5'- -gGGGCgagcguccgcccgucUUCGUCcagcuGCUCGCCGCUgaggUGGCc -3'
miRNA:   3'- gaCCCG---------------AAGUAG-----CGGGCGGCGG----ACCG- -5'
23041 5' -61.5 NC_005178.1 + 11148 0.66 0.290844
Target:  5'- -cGGGCgccc-UGgCCGCCGCCcugGGCu -3'
miRNA:   3'- gaCCCGaaguaGCgGGCGGCGGa--CCG- -5'
23041 5' -61.5 NC_005178.1 + 26724 0.66 0.283695
Target:  5'- -aGGGUgcccagguucUCGacgaucuggcUCGCCCGCUcguccauuGCCUGGCu -3'
miRNA:   3'- gaCCCGa---------AGU----------AGCGGGCGG--------CGGACCG- -5'
23041 5' -61.5 NC_005178.1 + 10160 0.66 0.283695
Target:  5'- -aGGcGCUuaUCAUCGaCaggaGCCGCCaUGGCc -3'
miRNA:   3'- gaCC-CGA--AGUAGCgGg---CGGCGG-ACCG- -5'
23041 5' -61.5 NC_005178.1 + 6799 0.66 0.276687
Target:  5'- aUGGGgaUCAgUGCUCGgCGCaUGGCg -3'
miRNA:   3'- gACCCgaAGUaGCGGGCgGCGgACCG- -5'
23041 5' -61.5 NC_005178.1 + 20020 0.66 0.276687
Target:  5'- --cGGCcagcCcgCGCCCGCUGCC-GGCc -3'
miRNA:   3'- gacCCGaa--GuaGCGGGCGGCGGaCCG- -5'
23041 5' -61.5 NC_005178.1 + 27177 0.67 0.250033
Target:  5'- --aGGCgUUCGUCGUUCggguuaGCCGCCUGGa -3'
miRNA:   3'- gacCCG-AAGUAGCGGG------CGGCGGACCg -5'
23041 5' -61.5 NC_005178.1 + 34853 0.67 0.250033
Target:  5'- -cGGGCUggAUucCGCCCGaccggaCGCCUcgGGCg -3'
miRNA:   3'- gaCCCGAagUA--GCGGGCg-----GCGGA--CCG- -5'
23041 5' -61.5 NC_005178.1 + 30539 0.67 0.243709
Target:  5'- -cGGGCUgugcaaCAUgGCCUuCCucgcGCCUGGCg -3'
miRNA:   3'- gaCCCGAa-----GUAgCGGGcGG----CGGACCG- -5'
23041 5' -61.5 NC_005178.1 + 5819 0.67 0.237519
Target:  5'- gCUGGGCgacacggUCGU-GCCCgagGCCGCCaccgaugcGGCg -3'
miRNA:   3'- -GACCCGa------AGUAgCGGG---CGGCGGa-------CCG- -5'
23041 5' -61.5 NC_005178.1 + 16049 0.68 0.231461
Target:  5'- -cGGGCUguucCGCgUGCUGgCCUGGCc -3'
miRNA:   3'- gaCCCGAaguaGCGgGCGGC-GGACCG- -5'
23041 5' -61.5 NC_005178.1 + 12925 0.68 0.231461
Target:  5'- gUGGGCUggaggaCGUgGCgCGCCaggugcuggccgGCCUGGUg -3'
miRNA:   3'- gACCCGAa-----GUAgCGgGCGG------------CGGACCG- -5'
23041 5' -61.5 NC_005178.1 + 7186 0.68 0.214065
Target:  5'- -gGGGUugUUCAgcggCGCCgGCCGCUggaGGUa -3'
miRNA:   3'- gaCCCG--AAGUa---GCGGgCGGCGGa--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.