miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23044 3' -62.4 NC_005178.1 + 24503 1.08 0.000141
Target:  5'- cGAUGACCGGCGCGCCGCCUUCGGCCAg -3'
miRNA:   3'- -CUACUGGCCGCGCGGCGGAAGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 28288 0.76 0.048306
Target:  5'- gGGUGACCGGCGCugcgggaGCUGCCgg-GGCCGc -3'
miRNA:   3'- -CUACUGGCCGCG-------CGGCGGaagCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 12660 0.75 0.055918
Target:  5'- --cGGCCGGCGCGCUGgCgggUGGCCu -3'
miRNA:   3'- cuaCUGGCCGCGCGGCgGaa-GCCGGu -5'
23044 3' -62.4 NC_005178.1 + 3808 0.75 0.054339
Target:  5'- cGAUGGcCCGGCGCGUCaGCUUgaaggUGGCCAg -3'
miRNA:   3'- -CUACU-GGCCGCGCGG-CGGAa----GCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 31963 0.75 0.057542
Target:  5'- cGAUGACCGGCaGCGCCaucCCggcgacgUCGGUCAc -3'
miRNA:   3'- -CUACUGGCCG-CGCGGc--GGa------AGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 4574 0.75 0.062692
Target:  5'- --aGGCCGGaGCGuuGCCgcUCGGCCAg -3'
miRNA:   3'- cuaCUGGCCgCGCggCGGa-AGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 12119 0.75 0.062692
Target:  5'- --cGAUgGGCGCGCCGCCUgc-GCCGa -3'
miRNA:   3'- cuaCUGgCCGCGCGGCGGAagcCGGU- -5'
23044 3' -62.4 NC_005178.1 + 5009 0.73 0.076496
Target:  5'- cGAUGAUCagcgGGCG-GCCGCUggCGGCCAg -3'
miRNA:   3'- -CUACUGG----CCGCgCGGCGGaaGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 17406 0.73 0.088092
Target:  5'- cAUGGCCgGGCGCuauGCCGCCgcauacgaGGCCAg -3'
miRNA:   3'- cUACUGG-CCGCG---CGGCGGaag-----CCGGU- -5'
23044 3' -62.4 NC_005178.1 + 27366 0.72 0.095834
Target:  5'- --aGGCCGGCGCGCugcugCGCCUggagcuucugcUCGGCg- -3'
miRNA:   3'- cuaCUGGCCGCGCG-----GCGGA-----------AGCCGgu -5'
23044 3' -62.4 NC_005178.1 + 26824 0.72 0.101348
Target:  5'- uGUGGCCaGCgGgGCUGUCUUCGGCCc -3'
miRNA:   3'- cUACUGGcCG-CgCGGCGGAAGCCGGu -5'
23044 3' -62.4 NC_005178.1 + 28971 0.71 0.113285
Target:  5'- aGGUGACCcuGCGCGCCccugGCCUgggCGGCa- -3'
miRNA:   3'- -CUACUGGc-CGCGCGG----CGGAa--GCCGgu -5'
23044 3' -62.4 NC_005178.1 + 28224 0.7 0.133671
Target:  5'- -cUGAgCGGCGcCGCCGCUaUCcaGGCCGc -3'
miRNA:   3'- cuACUgGCCGC-GCGGCGGaAG--CCGGU- -5'
23044 3' -62.4 NC_005178.1 + 7880 0.7 0.137382
Target:  5'- cGUGACUGuGCGCGgCGCCgaugCGGUCc -3'
miRNA:   3'- cUACUGGC-CGCGCgGCGGaa--GCCGGu -5'
23044 3' -62.4 NC_005178.1 + 33332 0.7 0.145088
Target:  5'- uGUGACgagGGCGacgaacagguCGCCGUCUUCGGUCAg -3'
miRNA:   3'- cUACUGg--CCGC----------GCGGCGGAAGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 24582 0.7 0.145088
Target:  5'- gGAU-ACCGGCGaccuggGCCG-CUUCGGCCGc -3'
miRNA:   3'- -CUAcUGGCCGCg-----CGGCgGAAGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 33062 0.7 0.130053
Target:  5'- --gGuCCGGCGUGCCGCUcgauguagCGGCUAu -3'
miRNA:   3'- cuaCuGGCCGCGCGGCGGaa------GCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 31890 0.69 0.164771
Target:  5'- cGUGACCgacgucgccgggauGGCGCuGCCgGUCaUCGGCCAu -3'
miRNA:   3'- cUACUGG--------------CCGCG-CGG-CGGaAGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 7413 0.69 0.166105
Target:  5'- uGAUGGgcuuCCaGCGCGaCGCC-UCGGCCGg -3'
miRNA:   3'- -CUACU----GGcCGCGCgGCGGaAGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 23466 0.69 0.166105
Target:  5'- --cGcCCGGCGCGaaGCCggcccgcugcUCGGCCGg -3'
miRNA:   3'- cuaCuGGCCGCGCggCGGa---------AGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.