miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23044 5' -57.1 NC_005178.1 + 24465 1.1 0.000255
Target:  5'- uUAUAGCGCAGGGCAACGGUCGGCUGCg -3'
miRNA:   3'- -AUAUCGCGUCCCGUUGCCAGCCGACG- -5'
23044 5' -57.1 NC_005178.1 + 4534 0.83 0.032601
Target:  5'- gGUAGCGCuGGGCGggaGCGGUCGGCaggGUg -3'
miRNA:   3'- aUAUCGCGuCCCGU---UGCCAGCCGa--CG- -5'
23044 5' -57.1 NC_005178.1 + 12814 0.78 0.068876
Target:  5'- --cGGCGCAGGGCGucGCGGguuuccuUCGGgUGCg -3'
miRNA:   3'- auaUCGCGUCCCGU--UGCC-------AGCCgACG- -5'
23044 5' -57.1 NC_005178.1 + 28145 0.78 0.073305
Target:  5'- --cGGCGCccaGGGGCuGACGGUCGGCgccucgGCu -3'
miRNA:   3'- auaUCGCG---UCCCG-UUGCCAGCCGa-----CG- -5'
23044 5' -57.1 NC_005178.1 + 23711 0.75 0.120599
Target:  5'- gGUGGCGCAGGGCGACGagaucgacGUCaGUcGCg -3'
miRNA:   3'- aUAUCGCGUCCCGUUGC--------CAGcCGaCG- -5'
23044 5' -57.1 NC_005178.1 + 591 0.73 0.169708
Target:  5'- --gAGCGCAGGGC-ACGGUuccuggaccgaCGGC-GCc -3'
miRNA:   3'- auaUCGCGUCCCGuUGCCA-----------GCCGaCG- -5'
23044 5' -57.1 NC_005178.1 + 17203 0.73 0.179461
Target:  5'- --cAGCGCucGGGCAugGGU-GGCcGCg -3'
miRNA:   3'- auaUCGCGu-CCCGUugCCAgCCGaCG- -5'
23044 5' -57.1 NC_005178.1 + 4488 0.72 0.189708
Target:  5'- gGUGGCuuggGUGGuGGCuGCGGUCGGgUGCg -3'
miRNA:   3'- aUAUCG----CGUC-CCGuUGCCAGCCgACG- -5'
23044 5' -57.1 NC_005178.1 + 30522 0.72 0.200466
Target:  5'- gAUGGCGCAcGGCAccacguUGGUCGaGCUGUu -3'
miRNA:   3'- aUAUCGCGUcCCGUu-----GCCAGC-CGACG- -5'
23044 5' -57.1 NC_005178.1 + 9623 0.72 0.206041
Target:  5'- --cGGCGCAGGGCAucGCGcUCGcGCUucGCu -3'
miRNA:   3'- auaUCGCGUCCCGU--UGCcAGC-CGA--CG- -5'
23044 5' -57.1 NC_005178.1 + 10139 0.71 0.229698
Target:  5'- ---uGCGCcGGGCcauAUGGUCGGCguaGCu -3'
miRNA:   3'- auauCGCGuCCCGu--UGCCAGCCGa--CG- -5'
23044 5' -57.1 NC_005178.1 + 32412 0.71 0.23596
Target:  5'- ---uGCGgAuGGGCAGcCGGUgCGGCUGUa -3'
miRNA:   3'- auauCGCgU-CCCGUU-GCCA-GCCGACG- -5'
23044 5' -57.1 NC_005178.1 + 3196 0.7 0.283867
Target:  5'- --cAGUGCAuGGGCAgcGCGGgc-GCUGCg -3'
miRNA:   3'- auaUCGCGU-CCCGU--UGCCagcCGACG- -5'
23044 5' -57.1 NC_005178.1 + 18634 0.69 0.291307
Target:  5'- ---uGCGCcuGGUcACGGUCGGC-GCg -3'
miRNA:   3'- auauCGCGucCCGuUGCCAGCCGaCG- -5'
23044 5' -57.1 NC_005178.1 + 20962 0.69 0.291307
Target:  5'- -cUGGaGCGGGGUguuGCGGUCGGUggucaggGCg -3'
miRNA:   3'- auAUCgCGUCCCGu--UGCCAGCCGa------CG- -5'
23044 5' -57.1 NC_005178.1 + 7059 0.69 0.298899
Target:  5'- --gAGgGCGacGGGUAGCGGUUGGCgaggauggUGCu -3'
miRNA:   3'- auaUCgCGU--CCCGUUGCCAGCCG--------ACG- -5'
23044 5' -57.1 NC_005178.1 + 31728 0.69 0.314539
Target:  5'- --cAGCGUA-GGCuguuCGGUCaGCUGCg -3'
miRNA:   3'- auaUCGCGUcCCGuu--GCCAGcCGACG- -5'
23044 5' -57.1 NC_005178.1 + 8642 0.69 0.314539
Target:  5'- cGUGGUGCaguuGGGGC--CGGcUCGGcCUGCg -3'
miRNA:   3'- aUAUCGCG----UCCCGuuGCC-AGCC-GACG- -5'
23044 5' -57.1 NC_005178.1 + 10332 0.68 0.339146
Target:  5'- --gGGCGCggaGGGGCGaaGCGcGcCGgGCUGCg -3'
miRNA:   3'- auaUCGCG---UCCCGU--UGC-CaGC-CGACG- -5'
23044 5' -57.1 NC_005178.1 + 11314 0.68 0.345085
Target:  5'- gGUGGC-CGGGcucuaccaacuggaGcCAGCGGUCGGcCUGCu -3'
miRNA:   3'- aUAUCGcGUCC--------------C-GUUGCCAGCC-GACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.