miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23044 5' -57.1 NC_005178.1 + 591 0.73 0.169708
Target:  5'- --gAGCGCAGGGC-ACGGUuccuggaccgaCGGC-GCc -3'
miRNA:   3'- auaUCGCGUCCCGuUGCCA-----------GCCGaCG- -5'
23044 5' -57.1 NC_005178.1 + 1493 0.66 0.481836
Target:  5'- gUAUAGCGC-GGGC------CGGCUGCg -3'
miRNA:   3'- -AUAUCGCGuCCCGuugccaGCCGACG- -5'
23044 5' -57.1 NC_005178.1 + 1979 0.66 0.47974
Target:  5'- cGUGGCGCGGGaaccgcuGCAGCagaGGUCgcggccuGGCUGa -3'
miRNA:   3'- aUAUCGCGUCC-------CGUUG---CCAG-------CCGACg -5'
23044 5' -57.1 NC_005178.1 + 2955 0.66 0.44482
Target:  5'- --aGGCGCgccauguccagcaucAGGGUAAUGGagcguuucCGGCUGUa -3'
miRNA:   3'- auaUCGCG---------------UCCCGUUGCCa-------GCCGACG- -5'
23044 5' -57.1 NC_005178.1 + 3196 0.7 0.283867
Target:  5'- --cAGUGCAuGGGCAgcGCGGgc-GCUGCg -3'
miRNA:   3'- auaUCGCGU-CCCGU--UGCCagcCGACG- -5'
23044 5' -57.1 NC_005178.1 + 4488 0.72 0.189708
Target:  5'- gGUGGCuuggGUGGuGGCuGCGGUCGGgUGCg -3'
miRNA:   3'- aUAUCG----CGUC-CCGuUGCCAGCCgACG- -5'
23044 5' -57.1 NC_005178.1 + 4534 0.83 0.032601
Target:  5'- gGUAGCGCuGGGCGggaGCGGUCGGCaggGUg -3'
miRNA:   3'- aUAUCGCGuCCCGU---UGCCAGCCGa--CG- -5'
23044 5' -57.1 NC_005178.1 + 5823 0.68 0.347653
Target:  5'- --cGGUGCuGGGCGacACGGUCGuGCccgagGCc -3'
miRNA:   3'- auaUCGCGuCCCGU--UGCCAGC-CGa----CG- -5'
23044 5' -57.1 NC_005178.1 + 7059 0.69 0.298899
Target:  5'- --gAGgGCGacGGGUAGCGGUUGGCgaggauggUGCu -3'
miRNA:   3'- auaUCgCGU--CCCGUUGCCAGCCG--------ACG- -5'
23044 5' -57.1 NC_005178.1 + 8642 0.69 0.314539
Target:  5'- cGUGGUGCaguuGGGGC--CGGcUCGGcCUGCg -3'
miRNA:   3'- aUAUCGCG----UCCCGuuGCC-AGCC-GACG- -5'
23044 5' -57.1 NC_005178.1 + 8773 0.68 0.374078
Target:  5'- --cAGCGUGcGGGCGGCGGUCu-UUGCa -3'
miRNA:   3'- auaUCGCGU-CCCGUUGCCAGccGACG- -5'
23044 5' -57.1 NC_005178.1 + 9623 0.72 0.206041
Target:  5'- --cGGCGCAGGGCAucGCGcUCGcGCUucGCu -3'
miRNA:   3'- auaUCGCGUCCCGU--UGCcAGC-CGA--CG- -5'
23044 5' -57.1 NC_005178.1 + 10139 0.71 0.229698
Target:  5'- ---uGCGCcGGGCcauAUGGUCGGCguaGCu -3'
miRNA:   3'- auauCGCGuCCCGu--UGCCAGCCGa--CG- -5'
23044 5' -57.1 NC_005178.1 + 10332 0.68 0.339146
Target:  5'- --gGGCGCggaGGGGCGaaGCGcGcCGgGCUGCg -3'
miRNA:   3'- auaUCGCG---UCCCGU--UGC-CaGC-CGACG- -5'
23044 5' -57.1 NC_005178.1 + 11212 0.66 0.440805
Target:  5'- --aAGCcCAGGGCGGCGGcCagGGCgcccGCg -3'
miRNA:   3'- auaUCGcGUCCCGUUGCCaG--CCGa---CG- -5'
23044 5' -57.1 NC_005178.1 + 11314 0.68 0.345085
Target:  5'- gGUGGC-CGGGcucuaccaacuggaGcCAGCGGUCGGcCUGCu -3'
miRNA:   3'- aUAUCGcGUCC--------------C-GUUGCCAGCC-GACG- -5'
23044 5' -57.1 NC_005178.1 + 12814 0.78 0.068876
Target:  5'- --cGGCGCAGGGCGucGCGGguuuccuUCGGgUGCg -3'
miRNA:   3'- auaUCGCGUCCCGU--UGCC-------AGCCgACG- -5'
23044 5' -57.1 NC_005178.1 + 12904 0.66 0.492383
Target:  5'- --cGGCGCAGuugcuGGcCggUGGUgGGCUGg -3'
miRNA:   3'- auaUCGCGUC-----CC-GuuGCCAgCCGACg -5'
23044 5' -57.1 NC_005178.1 + 15336 0.66 0.45088
Target:  5'- ---uGUGCAGGGCGuCGGggccaucgucgUGGuCUGCg -3'
miRNA:   3'- auauCGCGUCCCGUuGCCa----------GCC-GACG- -5'
23044 5' -57.1 NC_005178.1 + 15557 0.68 0.36512
Target:  5'- --cGGC-CAGGuGC-GCGGUCuGCUGCu -3'
miRNA:   3'- auaUCGcGUCC-CGuUGCCAGcCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.