miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23044 5' -57.1 NC_005178.1 + 28145 0.78 0.073305
Target:  5'- --cGGCGCccaGGGGCuGACGGUCGGCgccucgGCu -3'
miRNA:   3'- auaUCGCG---UCCCG-UUGCCAGCCGa-----CG- -5'
23044 5' -57.1 NC_005178.1 + 12904 0.66 0.492383
Target:  5'- --cGGCGCAGuugcuGGcCggUGGUgGGCUGg -3'
miRNA:   3'- auaUCGCGUC-----CC-GuuGCCAgCCGACg -5'
23044 5' -57.1 NC_005178.1 + 23463 0.66 0.486042
Target:  5'- --gGGCGCccGGcGCGAagccggcccgcugcuCGGcCGGCUGCu -3'
miRNA:   3'- auaUCGCGu-CC-CGUU---------------GCCaGCCGACG- -5'
23044 5' -57.1 NC_005178.1 + 1979 0.66 0.47974
Target:  5'- cGUGGCGCGGGaaccgcuGCAGCagaGGUCgcggccuGGCUGa -3'
miRNA:   3'- aUAUCGCGUCC-------CGUUG---CCAG-------CCGACg -5'
23044 5' -57.1 NC_005178.1 + 36904 0.66 0.46108
Target:  5'- -cUAG-GCGGGGUuGCGGcuaUGGCUGUc -3'
miRNA:   3'- auAUCgCGUCCCGuUGCCa--GCCGACG- -5'
23044 5' -57.1 NC_005178.1 + 33830 0.66 0.45088
Target:  5'- gGUGGUGacaAGGGCGAaGGUgGGCUc- -3'
miRNA:   3'- aUAUCGCg--UCCCGUUgCCAgCCGAcg -5'
23044 5' -57.1 NC_005178.1 + 30270 0.67 0.421047
Target:  5'- --cGGUaCAGcGGCGGCGGcagCGuGCUGCg -3'
miRNA:   3'- auaUCGcGUC-CCGUUGCCa--GC-CGACG- -5'
23044 5' -57.1 NC_005178.1 + 30563 0.67 0.401832
Target:  5'- ---cGCGCcuGGCGAuccguuggUGGUCGGCaGCg -3'
miRNA:   3'- auauCGCGucCCGUU--------GCCAGCCGaCG- -5'
23044 5' -57.1 NC_005178.1 + 26160 0.67 0.398057
Target:  5'- gGUAGCGCcuuuaucaucaucGGcGCGGCGGUgGccGCUGCg -3'
miRNA:   3'- aUAUCGCGu------------CC-CGUUGCCAgC--CGACG- -5'
23044 5' -57.1 NC_005178.1 + 8773 0.68 0.374078
Target:  5'- --cAGCGUGcGGGCGGCGGUCu-UUGCa -3'
miRNA:   3'- auaUCGCGU-CCCGUUGCCAGccGACG- -5'
23044 5' -57.1 NC_005178.1 + 11314 0.68 0.345085
Target:  5'- gGUGGC-CGGGcucuaccaacuggaGcCAGCGGUCGGcCUGCu -3'
miRNA:   3'- aUAUCGcGUCC--------------C-GUUGCCAGCC-GACG- -5'
23044 5' -57.1 NC_005178.1 + 10332 0.68 0.339146
Target:  5'- --gGGCGCggaGGGGCGaaGCGcGcCGgGCUGCg -3'
miRNA:   3'- auaUCGCG---UCCCGU--UGC-CaGC-CGACG- -5'
23044 5' -57.1 NC_005178.1 + 32412 0.71 0.23596
Target:  5'- ---uGCGgAuGGGCAGcCGGUgCGGCUGUa -3'
miRNA:   3'- auauCGCgU-CCCGUU-GCCA-GCCGACG- -5'
23044 5' -57.1 NC_005178.1 + 23711 0.75 0.120599
Target:  5'- gGUGGCGCAGGGCGACGagaucgacGUCaGUcGCg -3'
miRNA:   3'- aUAUCGCGUCCCGUUGC--------CAGcCGaCG- -5'
23044 5' -57.1 NC_005178.1 + 4488 0.72 0.189708
Target:  5'- gGUGGCuuggGUGGuGGCuGCGGUCGGgUGCg -3'
miRNA:   3'- aUAUCG----CGUC-CCGuUGCCAGCCgACG- -5'
23044 5' -57.1 NC_005178.1 + 17203 0.73 0.179461
Target:  5'- --cAGCGCucGGGCAugGGU-GGCcGCg -3'
miRNA:   3'- auaUCGCGu-CCCGUugCCAgCCGaCG- -5'
23044 5' -57.1 NC_005178.1 + 591 0.73 0.169708
Target:  5'- --gAGCGCAGGGC-ACGGUuccuggaccgaCGGC-GCc -3'
miRNA:   3'- auaUCGCGUCCCGuUGCCA-----------GCCGaCG- -5'
23044 5' -57.1 NC_005178.1 + 12814 0.78 0.068876
Target:  5'- --cGGCGCAGGGCGucGCGGguuuccuUCGGgUGCg -3'
miRNA:   3'- auaUCGCGUCCCGU--UGCC-------AGCCgACG- -5'
23044 5' -57.1 NC_005178.1 + 4534 0.83 0.032601
Target:  5'- gGUAGCGCuGGGCGggaGCGGUCGGCaggGUg -3'
miRNA:   3'- aUAUCGCGuCCCGU---UGCCAGCCGa--CG- -5'
23044 5' -57.1 NC_005178.1 + 24116 0.66 0.492383
Target:  5'- ---uGUGCAGGGUgauguuGACGGUggCGGUcuUGCc -3'
miRNA:   3'- auauCGCGUCCCG------UUGCCA--GCCG--ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.