miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23045 3' -62.4 NC_005178.1 + 25137 0.73 0.08738
Target:  5'- aGCGGCCgAgcuGGUCGCgcUGGUGUCCuGCUg -3'
miRNA:   3'- -CGCCGGgU---CCAGCG--GCCAUAGGcCGA- -5'
23045 3' -62.4 NC_005178.1 + 30861 0.66 0.261532
Target:  5'- cCGGCCCAGGUCgagGCCGcGaccgcugCCaGGCg -3'
miRNA:   3'- cGCCGGGUCCAG---CGGC-Caua----GG-CCGa -5'
23045 3' -62.4 NC_005178.1 + 31267 0.68 0.204659
Target:  5'- gGCGaacGUCCAGGcgaugauccgaUUGCCGGUgaugaccaggaccagGUCCGGCUc -3'
miRNA:   3'- -CGC---CGGGUCC-----------AGCGGCCA---------------UAGGCCGA- -5'
23045 3' -62.4 NC_005178.1 + 31371 0.7 0.150515
Target:  5'- cGCGGCgCCAGGcgcauagcccggCGCUGG-GUCaCGGCUg -3'
miRNA:   3'- -CGCCG-GGUCCa-----------GCGGCCaUAG-GCCGA- -5'
23045 3' -62.4 NC_005178.1 + 31448 0.66 0.295946
Target:  5'- aGCuGCuCCAGGaacCGCUGGcggCCGGCUc -3'
miRNA:   3'- -CGcCG-GGUCCa--GCGGCCauaGGCCGA- -5'
23045 3' -62.4 NC_005178.1 + 31651 0.66 0.303237
Target:  5'- gGCGGaCCAGGUCcagGCCGG----CGGCg -3'
miRNA:   3'- -CGCCgGGUCCAG---CGGCCauagGCCGa -5'
23045 3' -62.4 NC_005178.1 + 32081 0.66 0.281773
Target:  5'- -aGGgUCAGGUCGUCGGcGUgggUCGGCa -3'
miRNA:   3'- cgCCgGGUCCAGCGGCCaUA---GGCCGa -5'
23045 3' -62.4 NC_005178.1 + 32281 0.73 0.09606
Target:  5'- gGCGGCCCAGGgcggCGUcgauggccaaacgcuCGGUGU-CGGCg -3'
miRNA:   3'- -CGCCGGGUCCa---GCG---------------GCCAUAgGCCGa -5'
23045 3' -62.4 NC_005178.1 + 32917 0.67 0.236405
Target:  5'- aGCGG-CguGGUCGCCGGcaugCCgauGGCUg -3'
miRNA:   3'- -CGCCgGguCCAGCGGCCaua-GG---CCGA- -5'
23045 3' -62.4 NC_005178.1 + 33532 0.72 0.112154
Target:  5'- aGUGGUCCAGGUCgGCaCGGUGUgCaGGUg -3'
miRNA:   3'- -CGCCGGGUCCAG-CG-GCCAUAgG-CCGa -5'
23045 3' -62.4 NC_005178.1 + 34883 0.69 0.168427
Target:  5'- gGCGGCgCCA---CGCCGGUugucgCCGGCa -3'
miRNA:   3'- -CGCCG-GGUccaGCGGCCAua---GGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.