miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23045 3' -62.4 NC_005178.1 + 11876 0.66 0.303237
Target:  5'- cGCGGUcaCCAGGgcgGCCagGGUGUCCuGGUc -3'
miRNA:   3'- -CGCCG--GGUCCag-CGG--CCAUAGG-CCGa -5'
23045 3' -62.4 NC_005178.1 + 11762 0.66 0.303237
Target:  5'- cGUGGCCCgagccauggGGGUucCGCCGcaggCCGGCc -3'
miRNA:   3'- -CGCCGGG---------UCCA--GCGGCcauaGGCCGa -5'
23045 3' -62.4 NC_005178.1 + 10294 0.74 0.078124
Target:  5'- cCGGCCau-GUCGCggaCGGUAUCCGGCa -3'
miRNA:   3'- cGCCGGgucCAGCG---GCCAUAGGCCGa -5'
23045 3' -62.4 NC_005178.1 + 9659 0.66 0.268145
Target:  5'- cGCGGCCgGuGGcuUCGCCGag--CCGGCc -3'
miRNA:   3'- -CGCCGGgU-CC--AGCGGCcauaGGCCGa -5'
23045 3' -62.4 NC_005178.1 + 9443 0.68 0.213333
Target:  5'- cCGGCCUAgccgggacGGUCuGCCGGacguggugGUCCGGUa -3'
miRNA:   3'- cGCCGGGU--------CCAG-CGGCCa-------UAGGCCGa -5'
23045 3' -62.4 NC_005178.1 + 9095 0.68 0.213333
Target:  5'- cGCGGCauugcuCCAGGUCgaaGCCGGcaa-CGGCg -3'
miRNA:   3'- -CGCCG------GGUCCAG---CGGCCauagGCCGa -5'
23045 3' -62.4 NC_005178.1 + 5923 0.71 0.115282
Target:  5'- gGCGGCCgAGG--GCCGGUGUagCGGCc -3'
miRNA:   3'- -CGCCGGgUCCagCGGCCAUAg-GCCGa -5'
23045 3' -62.4 NC_005178.1 + 5880 0.75 0.064141
Target:  5'- gGCGGCCguugCGGGUCa--GGUAUCCGGCg -3'
miRNA:   3'- -CGCCGG----GUCCAGcggCCAUAGGCCGa -5'
23045 3' -62.4 NC_005178.1 + 5210 0.7 0.155448
Target:  5'- cCGGCgCCAGGUUGCgGGcGUCCuccagagacacuGGCUg -3'
miRNA:   3'- cGCCG-GGUCCAGCGgCCaUAGG------------CCGA- -5'
23045 3' -62.4 NC_005178.1 + 4028 0.71 0.128274
Target:  5'- aGCGGCCgGGccucGUCGUCGGUgacgcgcAUCgGGCUg -3'
miRNA:   3'- -CGCCGGgUC----CAGCGGCCA-------UAGgCCGA- -5'
23045 3' -62.4 NC_005178.1 + 1516 0.69 0.181888
Target:  5'- gGCGGCguaguugcacucaCCAGGUauaGCgCGGg--CCGGCUg -3'
miRNA:   3'- -CGCCG-------------GGUCCAg--CG-GCCauaGGCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.