miRNA display CGI


Results 21 - 31 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23045 3' -62.4 NC_005178.1 + 21092 0.77 0.040673
Target:  5'- cGCGGCCCAGGUaggucagGCCGGUGg-CGGUg -3'
miRNA:   3'- -CGCCGGGUCCAg------CGGCCAUagGCCGa -5'
23045 3' -62.4 NC_005178.1 + 24640 0.97 0.001207
Target:  5'- aGC-GCCCAGGUCGCCGGUAUCCGGCUu -3'
miRNA:   3'- -CGcCGGGUCCAGCGGCCAUAGGCCGA- -5'
23045 3' -62.4 NC_005178.1 + 14287 0.71 0.132176
Target:  5'- -aGGUCCAGGUCuUCGGc-UCCGGCa -3'
miRNA:   3'- cgCCGGGUCCAGcGGCCauAGGCCGa -5'
23045 3' -62.4 NC_005178.1 + 11762 0.66 0.303237
Target:  5'- cGUGGCCCgagccauggGGGUucCGCCGcaggCCGGCc -3'
miRNA:   3'- -CGCCGGG---------UCCA--GCGGCcauaGGCCGa -5'
23045 3' -62.4 NC_005178.1 + 31448 0.66 0.295946
Target:  5'- aGCuGCuCCAGGaacCGCUGGcggCCGGCUc -3'
miRNA:   3'- -CGcCG-GGUCCa--GCGGCCauaGGCCGA- -5'
23045 3' -62.4 NC_005178.1 + 9659 0.66 0.268145
Target:  5'- cGCGGCCgGuGGcuUCGCCGag--CCGGCc -3'
miRNA:   3'- -CGCCGGgU-CC--AGCGGCcauaGGCCGa -5'
23045 3' -62.4 NC_005178.1 + 20326 0.67 0.242491
Target:  5'- cGCGGCCCu-GUCGCUGGaagaaGGCa -3'
miRNA:   3'- -CGCCGGGucCAGCGGCCauaggCCGa -5'
23045 3' -62.4 NC_005178.1 + 32917 0.67 0.236405
Target:  5'- aGCGG-CguGGUCGCCGGcaugCCgauGGCUg -3'
miRNA:   3'- -CGCCgGguCCAGCGGCCaua-GG---CCGA- -5'
23045 3' -62.4 NC_005178.1 + 22877 0.67 0.236405
Target:  5'- cGUGGCCCAGGcuaUCGCCG--AUgCGGaCg -3'
miRNA:   3'- -CGCCGGGUCC---AGCGGCcaUAgGCC-Ga -5'
23045 3' -62.4 NC_005178.1 + 9443 0.68 0.213333
Target:  5'- cCGGCCUAgccgggacGGUCuGCCGGacguggugGUCCGGUa -3'
miRNA:   3'- cGCCGGGU--------CCAG-CGGCCa-------UAGGCCGa -5'
23045 3' -62.4 NC_005178.1 + 17331 0.69 0.182369
Target:  5'- cGgGGCCgAGGUCGCCcagcucGGcagcccgcgCCGGCUg -3'
miRNA:   3'- -CgCCGGgUCCAGCGG------CCaua------GGCCGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.