Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 23045 | 5' | -54.9 | NC_005178.1 | + | 4119 | 0.72 | 0.306643 |
|
Target: 5'- gCCAGCAGGGUgugggUCUacgacggcgaggGCCGCUuccUCUGCa -3' miRNA: 3'- -GGUCGUCCUA-----AGG------------CGGCGAcu-AGACG- -5' |
|||||||
| 23045 | 5' | -54.9 | NC_005178.1 | + | 8912 | 0.72 | 0.291307 |
|
Target: 5'- gCCAGCAGGAUcggcccggcuUCCGUgCGCUGGgggUGUg -3' miRNA: 3'- -GGUCGUCCUA----------AGGCG-GCGACUag-ACG- -5' |
|||||||
| 23045 | 5' | -54.9 | NC_005178.1 | + | 11767 | 0.73 | 0.276578 |
|
Target: 5'- cCCgAGCcaugGGGGUUCCGCCGCaggccGGcCUGCa -3' miRNA: 3'- -GG-UCG----UCCUAAGGCGGCGa----CUaGACG- -5' |
|||||||
| 23045 | 5' | -54.9 | NC_005178.1 | + | 24577 | 0.73 | 0.242365 |
|
Target: 5'- aCCGGCGacGGuguugCCGUCGCUGAUCaaUGCc -3' miRNA: 3'- -GGUCGU--CCuaa--GGCGGCGACUAG--ACG- -5' |
|||||||
| 23045 | 5' | -54.9 | NC_005178.1 | + | 13814 | 0.75 | 0.206041 |
|
Target: 5'- cCCAGCuugcggGGGAgUUCCGCCGCcaGAUCgagGCc -3' miRNA: 3'- -GGUCG------UCCU-AAGGCGGCGa-CUAGa--CG- -5' |
|||||||
| 23045 | 5' | -54.9 | NC_005178.1 | + | 24606 | 1.14 | 0.000289 |
|
Target: 5'- uCCAGCAGGAUUCCGCCGCUGAUCUGCa -3' miRNA: 3'- -GGUCGUCCUAAGGCGGCGACUAGACG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home