Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23048 | 3' | -53.2 | NC_005178.1 | + | 37456 | 0.66 | 0.733811 |
Target: 5'- gGAAGCgAUGGa-GGCCGaguUCAGCc -3' miRNA: 3'- gCUUCGgUACCaaCUGGCgguAGUCG- -5' |
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23048 | 3' | -53.2 | NC_005178.1 | + | 13376 | 0.66 | 0.733811 |
Target: 5'- gGAGG--AUGGUcuUGACCGCUuucugauagcaGUCGGCa -3' miRNA: 3'- gCUUCggUACCA--ACUGGCGG-----------UAGUCG- -5' |
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23048 | 3' | -53.2 | NC_005178.1 | + | 19810 | 0.66 | 0.72275 |
Target: 5'- uGccGCCAUGGUggcGACgGUCGagcgCGGCg -3' miRNA: 3'- gCuuCGGUACCAa--CUGgCGGUa---GUCG- -5' |
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23048 | 3' | -53.2 | NC_005178.1 | + | 14461 | 0.66 | 0.72275 |
Target: 5'- aCGAcaCCAUGGacgUGAUCaUCAUCGGCa -3' miRNA: 3'- -GCUucGGUACCa--ACUGGcGGUAGUCG- -5' |
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23048 | 3' | -53.2 | NC_005178.1 | + | 11821 | 0.66 | 0.72275 |
Target: 5'- --uGGCCGcccUGG-UGACCGCgAucauUCGGCa -3' miRNA: 3'- gcuUCGGU---ACCaACUGGCGgU----AGUCG- -5' |
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23048 | 3' | -53.2 | NC_005178.1 | + | 35398 | 0.66 | 0.72275 |
Target: 5'- gCGAGGgCCAacUGGccccggcgcUGGCCGCCAccgaCAGCc -3' miRNA: 3'- -GCUUC-GGU--ACCa--------ACUGGCGGUa---GUCG- -5' |
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23048 | 3' | -53.2 | NC_005178.1 | + | 11214 | 0.66 | 0.72275 |
Target: 5'- gGAAGCCcaGGgcGGCgGCCAg-GGCg -3' miRNA: 3'- gCUUCGGuaCCaaCUGgCGGUagUCG- -5' |
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23048 | 3' | -53.2 | NC_005178.1 | + | 5729 | 0.66 | 0.716065 |
Target: 5'- ---cGCCucgGUGGUguaucccugcugggaUGGCuUGCCAUCGGCg -3' miRNA: 3'- gcuuCGG---UACCA---------------ACUG-GCGGUAGUCG- -5' |
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23048 | 3' | -53.2 | NC_005178.1 | + | 16526 | 0.66 | 0.71159 |
Target: 5'- aGggGCCAgaGUaGAUCGCgAcUCAGCg -3' miRNA: 3'- gCuuCGGUacCAaCUGGCGgU-AGUCG- -5' |
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23048 | 3' | -53.2 | NC_005178.1 | + | 25808 | 0.66 | 0.700345 |
Target: 5'- aGGAGCaacGG--GACCGCCugcUCGGCa -3' miRNA: 3'- gCUUCGguaCCaaCUGGCGGu--AGUCG- -5' |
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23048 | 3' | -53.2 | NC_005178.1 | + | 12869 | 0.66 | 0.699217 |
Target: 5'- gGAAGCCGaGGggGACgacugggacaaggCGCaAUCGGCg -3' miRNA: 3'- gCUUCGGUaCCaaCUG-------------GCGgUAGUCG- -5' |
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23048 | 3' | -53.2 | NC_005178.1 | + | 27662 | 0.66 | 0.689028 |
Target: 5'- cCGcuGCCGUGGgcaUGGgCGCgCAaCAGCg -3' miRNA: 3'- -GCuuCGGUACCa--ACUgGCG-GUaGUCG- -5' |
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23048 | 3' | -53.2 | NC_005178.1 | + | 22262 | 0.66 | 0.689028 |
Target: 5'- cCGAccGCCA-GGcUGGcCCGCCAggCGGCg -3' miRNA: 3'- -GCUu-CGGUaCCaACU-GGCGGUa-GUCG- -5' |
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23048 | 3' | -53.2 | NC_005178.1 | + | 17238 | 0.67 | 0.677651 |
Target: 5'- uGGAGCaCAUccaGGcgugacgccUUGGCCaCCGUCAGCg -3' miRNA: 3'- gCUUCG-GUA---CC---------AACUGGcGGUAGUCG- -5' |
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23048 | 3' | -53.2 | NC_005178.1 | + | 24396 | 0.67 | 0.666228 |
Target: 5'- -uAGGCCGcuuugaacggcUGGgucggGGCCGgCGUCGGCa -3' miRNA: 3'- gcUUCGGU-----------ACCaa---CUGGCgGUAGUCG- -5' |
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23048 | 3' | -53.2 | NC_005178.1 | + | 24866 | 0.67 | 0.654769 |
Target: 5'- gGAAGCuCGUucugccGUUGAUUGCCGUgAGCu -3' miRNA: 3'- gCUUCG-GUAc-----CAACUGGCGGUAgUCG- -5' |
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23048 | 3' | -53.2 | NC_005178.1 | + | 7806 | 0.67 | 0.654769 |
Target: 5'- ---cGCCcUGGagGACCGCCA--GGCg -3' miRNA: 3'- gcuuCGGuACCaaCUGGCGGUagUCG- -5' |
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23048 | 3' | -53.2 | NC_005178.1 | + | 33002 | 0.68 | 0.608822 |
Target: 5'- aCGuAGCCcccGGUaaACCaGCCAUCGGCa -3' miRNA: 3'- -GCuUCGGua-CCAacUGG-CGGUAGUCG- -5' |
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23048 | 3' | -53.2 | NC_005178.1 | + | 26354 | 0.68 | 0.605381 |
Target: 5'- uGAGGCCGUGGcgGuacugucggaaaucACCGCgAcCGGCa -3' miRNA: 3'- gCUUCGGUACCaaC--------------UGGCGgUaGUCG- -5' |
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23048 | 3' | -53.2 | NC_005178.1 | + | 20313 | 0.68 | 0.597363 |
Target: 5'- aGAGGCCAaaGGUcgcGGCCGC--UCGGCg -3' miRNA: 3'- gCUUCGGUa-CCAa--CUGGCGguAGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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