Results 41 - 56 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23051 | 3' | -63.1 | NC_005178.1 | + | 14227 | 0.7 | 0.112975 |
Target: 5'- aGGGCGCCggcaagGGCCGCgUCUGGCAAg -3' miRNA: 3'- gUCCGCGGgaa---CCGGUG-GGGCCGUUg -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 16559 | 0.7 | 0.112975 |
Target: 5'- cCGGGCcgaCC-UGGCCGCCauGGCAACg -3' miRNA: 3'- -GUCCGcg-GGaACCGGUGGggCCGUUG- -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 17228 | 0.71 | 0.101031 |
Target: 5'- cCAGGCGUgacgCCUUGGCCACCgucagcgcuCgGGCAu- -3' miRNA: 3'- -GUCCGCG----GGAACCGGUGG---------GgCCGUug -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 26167 | 0.71 | 0.098236 |
Target: 5'- -uGGCGUUgUUGGCCgacGCUgCGGCAGCg -3' miRNA: 3'- guCCGCGGgAACCGG---UGGgGCCGUUG- -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 24588 | 0.71 | 0.095515 |
Target: 5'- -cGGCGaCCUgGGCCGCUUCGGCcGCa -3' miRNA: 3'- guCCGCgGGAaCCGGUGGGGCCGuUG- -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 12081 | 0.71 | 0.090284 |
Target: 5'- gAGGCGCCa--GGUCauucggaagACCUCGGCAGCa -3' miRNA: 3'- gUCCGCGGgaaCCGG---------UGGGGCCGUUG- -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 8066 | 0.72 | 0.085327 |
Target: 5'- -cGGUGUCag-GGUCAgCCCCGGCAGCc -3' miRNA: 3'- guCCGCGGgaaCCGGU-GGGGCCGUUG- -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 19742 | 0.72 | 0.078374 |
Target: 5'- -cGGCGCCaucuucUGGCCaaGCCCUGGCAcGCg -3' miRNA: 3'- guCCGCGGga----ACCGG--UGGGGCCGU-UG- -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 26671 | 0.74 | 0.062388 |
Target: 5'- aUAGGCGUCCaUGGCCAgUUgGGCGGCc -3' miRNA: 3'- -GUCCGCGGGaACCGGUgGGgCCGUUG- -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 28193 | 0.74 | 0.057246 |
Target: 5'- -cGGCGCCC-UGGCgACUgCUGGCGGCa -3' miRNA: 3'- guCCGCGGGaACCGgUGG-GGCCGUUG- -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 11810 | 0.75 | 0.045463 |
Target: 5'- cCAGGaCaCCC-UGGCCGCCCUGGUGACc -3' miRNA: 3'- -GUCC-GcGGGaACCGGUGGGGCCGUUG- -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 11147 | 0.76 | 0.040494 |
Target: 5'- gCGGGCGCCCUggccGCCGCCCUGGg--- -3' miRNA: 3'- -GUCCGCGGGAac--CGGUGGGGCCguug -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 33894 | 0.76 | 0.037121 |
Target: 5'- aGGGCGUCCU--GCCGCgCCUGGCGGCg -3' miRNA: 3'- gUCCGCGGGAacCGGUG-GGGCCGUUG- -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 23509 | 0.76 | 0.037121 |
Target: 5'- cCGGGCGCCC-UGGCCgucGCCCUGGgcguCGGCg -3' miRNA: 3'- -GUCCGCGGGaACCGG---UGGGGCC----GUUG- -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 12386 | 0.77 | 0.03118 |
Target: 5'- -cGGCGgCCUUGGCUcaaccgugcccgACCCCGGUGGCg -3' miRNA: 3'- guCCGCgGGAACCGG------------UGGGGCCGUUG- -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 26770 | 1.09 | 9.1e-05 |
Target: 5'- cCAGGCGCCCUUGGCCACCCCGGCAACg -3' miRNA: 3'- -GUCCGCGGGAACCGGUGGGGCCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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