miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23051 3' -63.1 NC_005178.1 + 28969 0.67 0.194746
Target:  5'- cCAGGUGaCCCUgcgcGCCccugGCCUgGGCGGCa -3'
miRNA:   3'- -GUCCGC-GGGAac--CGG----UGGGgCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 6587 0.67 0.189647
Target:  5'- gAGGCauuCCCUUGGCCAaCCgcaugcgcacggUGGCGGCg -3'
miRNA:   3'- gUCCGc--GGGAACCGGUgGG------------GCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 2802 0.67 0.189647
Target:  5'- -cGGacCGCCUUggUGGCCACCUCgcccagGGCGGCg -3'
miRNA:   3'- guCC--GCGGGA--ACCGGUGGGG------CCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 23272 0.68 0.175048
Target:  5'- uCGGGCGUCCccgaucUGGCCACCCUugacgaaCAGCg -3'
miRNA:   3'- -GUCCGCGGGa-----ACCGGUGGGGcc-----GUUG- -5'
23051 3' -63.1 NC_005178.1 + 307 0.68 0.175048
Target:  5'- gCAGGCGCUUUgcauagagaUGGUCAUCCaGGCGAa -3'
miRNA:   3'- -GUCCGCGGGA---------ACCGGUGGGgCCGUUg -5'
23051 3' -63.1 NC_005178.1 + 28145 0.68 0.16588
Target:  5'- -cGGCGCCCaggGGCUgacggucggcGCCUCGGCu-- -3'
miRNA:   3'- guCCGCGGGaa-CCGG----------UGGGGCCGuug -5'
23051 3' -63.1 NC_005178.1 + 8131 0.68 0.16588
Target:  5'- cCAGGUGCCCgagGGCgccaucgagauCGCCCgUGGgGACg -3'
miRNA:   3'- -GUCCGCGGGaa-CCG-----------GUGGG-GCCgUUG- -5'
23051 3' -63.1 NC_005178.1 + 12940 0.68 0.16588
Target:  5'- -uGGCGCgCCaggugcUGGCCGgCCUGGUGACc -3'
miRNA:   3'- guCCGCG-GGa-----ACCGGUgGGGCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 29026 0.68 0.16588
Target:  5'- gGGGCGCgCagGGUCACCUggcgcaCGGCGAUg -3'
miRNA:   3'- gUCCGCGgGaaCCGGUGGG------GCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 3574 0.68 0.161459
Target:  5'- gAGGCggucgGCCUUaugGGCCGCCUgGGCAu- -3'
miRNA:   3'- gUCCG-----CGGGAa--CCGGUGGGgCCGUug -5'
23051 3' -63.1 NC_005178.1 + 16482 0.68 0.161023
Target:  5'- -uGGC-CCCUccUGGuccucaaCCGCUCCGGCAACc -3'
miRNA:   3'- guCCGcGGGA--ACC-------GGUGGGGCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 14949 0.68 0.154606
Target:  5'- aCAGGCGUCCUggacguggucgGGCCGCCauccgcaagcgccugCCGGaCAAg -3'
miRNA:   3'- -GUCCGCGGGAa----------CCGGUGG---------------GGCC-GUUg -5'
23051 3' -63.1 NC_005178.1 + 17850 0.69 0.148828
Target:  5'- gGGaGCGCCU---GCCGCCCuCGGCGAg -3'
miRNA:   3'- gUC-CGCGGGaacCGGUGGG-GCCGUUg -5'
23051 3' -63.1 NC_005178.1 + 3823 0.69 0.144821
Target:  5'- uGGuGcCGCCCUUGGCgAUggCCCGGCGc- -3'
miRNA:   3'- gUC-C-GCGGGAACCGgUG--GGGCCGUug -5'
23051 3' -63.1 NC_005178.1 + 34970 0.69 0.140913
Target:  5'- gAGcGCGUCCUacuUGGCCGCgCUGGCcgaGGCg -3'
miRNA:   3'- gUC-CGCGGGA---ACCGGUGgGGCCG---UUG- -5'
23051 3' -63.1 NC_005178.1 + 17846 0.69 0.129405
Target:  5'- aGGGCGCUCUguaucgGGCUGCcgucgaaCCCGGCAu- -3'
miRNA:   3'- gUCCGCGGGAa-----CCGGUG-------GGGCCGUug -5'
23051 3' -63.1 NC_005178.1 + 16904 0.7 0.12623
Target:  5'- -cGGCGCCC-UGGCCGaggcauUCCCGGauaugGACg -3'
miRNA:   3'- guCCGCGGGaACCGGU------GGGGCCg----UUG- -5'
23051 3' -63.1 NC_005178.1 + 5809 0.7 0.119432
Target:  5'- aCGGucGUGCCCgaGGCCGCCaCCGauGCGGCg -3'
miRNA:   3'- -GUC--CGCGGGaaCCGGUGG-GGC--CGUUG- -5'
23051 3' -63.1 NC_005178.1 + 27731 0.7 0.119432
Target:  5'- -cGGCGCUgUUGcgcGCCcauGCCCaCGGCAGCg -3'
miRNA:   3'- guCCGCGGgAAC---CGG---UGGG-GCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 5000 0.7 0.116162
Target:  5'- gCGGGCgGCCgCUggcGGCCAguuCCUCGGCGAUc -3'
miRNA:   3'- -GUCCG-CGG-GAa--CCGGU---GGGGCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.