Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23051 | 3' | -63.1 | NC_005178.1 | + | 25579 | 0.66 | 0.248752 |
Target: 5'- aCGGGCGCUUUccugccauccgcuggUGGCUGCCCgcgUGGCggUg -3' miRNA: 3'- -GUCCGCGGGA---------------ACCGGUGGG---GCCGuuG- -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 6134 | 0.66 | 0.246221 |
Target: 5'- gUAGGUGUCgaggggcGGCCACCCCucGGCAc- -3' miRNA: 3'- -GUCCGCGGgaa----CCGGUGGGG--CCGUug -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 26888 | 0.66 | 0.245591 |
Target: 5'- aCGGGCcgaagacaGCCCcgcUGGCCACagcgcguCCCGGCu-- -3' miRNA: 3'- -GUCCG--------CGGGa--ACCGGUG-------GGGCCGuug -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 9736 | 0.66 | 0.239986 |
Target: 5'- aAGGUGaccgCCUcGGCCGgCUCGGCGAa -3' miRNA: 3'- gUCCGCg---GGAaCCGGUgGGGCCGUUg -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 2739 | 0.66 | 0.239986 |
Target: 5'- uGGGCGagg-UGGCCACCaaGGCGGu -3' miRNA: 3'- gUCCGCgggaACCGGUGGggCCGUUg -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 31852 | 0.66 | 0.2357 |
Target: 5'- cCGGGUGCUgCUccagcacUGGCCGCCCCcuguaggucgucgccGGCAu- -3' miRNA: 3'- -GUCCGCGG-GA-------ACCGGUGGGG---------------CCGUug -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 18525 | 0.66 | 0.233883 |
Target: 5'- -cGGgGCUCaacugaGGCCAUCCCGGCc-- -3' miRNA: 3'- guCCgCGGGaa----CCGGUGGGGCCGuug -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 13028 | 0.66 | 0.233883 |
Target: 5'- aAGGUGCagCUgcUGGCCAgCCUGGcCGAUg -3' miRNA: 3'- gUCCGCGg-GA--ACCGGUgGGGCC-GUUG- -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 19889 | 0.66 | 0.233883 |
Target: 5'- uGGGCGCCCUauggaUGuGCCGggCUGGCGGa -3' miRNA: 3'- gUCCGCGGGA-----AC-CGGUggGGCCGUUg -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 4251 | 0.66 | 0.227912 |
Target: 5'- aAGcGCGCCC-UGGCuCACCUCGaCGAg -3' miRNA: 3'- gUC-CGCGGGaACCG-GUGGGGCcGUUg -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 20804 | 0.66 | 0.227912 |
Target: 5'- gAGGcCGCCCUcgcGGUUugCUCGGCcauGCa -3' miRNA: 3'- gUCC-GCGGGAa--CCGGugGGGCCGu--UG- -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 21805 | 0.66 | 0.227912 |
Target: 5'- -cGGUGCCCUUGuuGCuCACCgaGGCAu- -3' miRNA: 3'- guCCGCGGGAAC--CG-GUGGggCCGUug -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 8900 | 0.66 | 0.222069 |
Target: 5'- -uGGCGUCgg-GGCuCACaCCCGGCAcGCg -3' miRNA: 3'- guCCGCGGgaaCCG-GUG-GGGCCGU-UG- -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 36065 | 0.66 | 0.222069 |
Target: 5'- aAGuGuCGCCCUcGGCCugGCCggaagUCGGCAGCg -3' miRNA: 3'- gUC-C-GCGGGAaCCGG--UGG-----GGCCGUUG- -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 21014 | 0.66 | 0.222069 |
Target: 5'- -cGGCGaagaCCUggacguUGGCCGCUaCCGGCAc- -3' miRNA: 3'- guCCGCg---GGA------ACCGGUGG-GGCCGUug -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 12036 | 0.66 | 0.222069 |
Target: 5'- -uGGCGCCUc-GGCUugGCCCUGGCc-- -3' miRNA: 3'- guCCGCGGGaaCCGG--UGGGGCCGuug -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 31169 | 0.67 | 0.205305 |
Target: 5'- uGGGCGagccggaCCUgguccUGGUCAUCaCCGGCAAUc -3' miRNA: 3'- gUCCGCg------GGA-----ACCGGUGG-GGCCGUUG- -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 5859 | 0.67 | 0.199965 |
Target: 5'- cCAGGCcgcuacaccgGCCCUcGGCCGCCCaucgucCAGCg -3' miRNA: 3'- -GUCCG----------CGGGAaCCGGUGGGgcc---GUUG- -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 20581 | 0.67 | 0.198386 |
Target: 5'- aCGGGCGCCCacuucgccgggucggGGUUACCgggggCGGCGACc -3' miRNA: 3'- -GUCCGCGGGaa-------------CCGGUGGg----GCCGUUG- -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 6064 | 0.67 | 0.194746 |
Target: 5'- -cGGUGCCgaggggUGGCCGCCCCu-CGACa -3' miRNA: 3'- guCCGCGGga----ACCGGUGGGGccGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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