miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23051 3' -63.1 NC_005178.1 + 307 0.68 0.175048
Target:  5'- gCAGGCGCUUUgcauagagaUGGUCAUCCaGGCGAa -3'
miRNA:   3'- -GUCCGCGGGA---------ACCGGUGGGgCCGUUg -5'
23051 3' -63.1 NC_005178.1 + 2739 0.66 0.239986
Target:  5'- uGGGCGagg-UGGCCACCaaGGCGGu -3'
miRNA:   3'- gUCCGCgggaACCGGUGGggCCGUUg -5'
23051 3' -63.1 NC_005178.1 + 2802 0.67 0.189647
Target:  5'- -cGGacCGCCUUggUGGCCACCUCgcccagGGCGGCg -3'
miRNA:   3'- guCC--GCGGGA--ACCGGUGGGG------CCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 3574 0.68 0.161459
Target:  5'- gAGGCggucgGCCUUaugGGCCGCCUgGGCAu- -3'
miRNA:   3'- gUCCG-----CGGGAa--CCGGUGGGgCCGUug -5'
23051 3' -63.1 NC_005178.1 + 3823 0.69 0.144821
Target:  5'- uGGuGcCGCCCUUGGCgAUggCCCGGCGc- -3'
miRNA:   3'- gUC-C-GCGGGAACCGgUG--GGGCCGUug -5'
23051 3' -63.1 NC_005178.1 + 4251 0.66 0.227912
Target:  5'- aAGcGCGCCC-UGGCuCACCUCGaCGAg -3'
miRNA:   3'- gUC-CGCGGGaACCG-GUGGGGCcGUUg -5'
23051 3' -63.1 NC_005178.1 + 5000 0.7 0.116162
Target:  5'- gCGGGCgGCCgCUggcGGCCAguuCCUCGGCGAUc -3'
miRNA:   3'- -GUCCG-CGG-GAa--CCGGU---GGGGCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 5809 0.7 0.119432
Target:  5'- aCGGucGUGCCCgaGGCCGCCaCCGauGCGGCg -3'
miRNA:   3'- -GUC--CGCGGGaaCCGGUGG-GGC--CGUUG- -5'
23051 3' -63.1 NC_005178.1 + 5859 0.67 0.199965
Target:  5'- cCAGGCcgcuacaccgGCCCUcGGCCGCCCaucgucCAGCg -3'
miRNA:   3'- -GUCCG----------CGGGAaCCGGUGGGgcc---GUUG- -5'
23051 3' -63.1 NC_005178.1 + 6064 0.67 0.194746
Target:  5'- -cGGUGCCgaggggUGGCCGCCCCu-CGACa -3'
miRNA:   3'- guCCGCGGga----ACCGGUGGGGccGUUG- -5'
23051 3' -63.1 NC_005178.1 + 6134 0.66 0.246221
Target:  5'- gUAGGUGUCgaggggcGGCCACCCCucGGCAc- -3'
miRNA:   3'- -GUCCGCGGgaa----CCGGUGGGG--CCGUug -5'
23051 3' -63.1 NC_005178.1 + 6587 0.67 0.189647
Target:  5'- gAGGCauuCCCUUGGCCAaCCgcaugcgcacggUGGCGGCg -3'
miRNA:   3'- gUCCGc--GGGAACCGGUgGG------------GCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 8066 0.72 0.085327
Target:  5'- -cGGUGUCag-GGUCAgCCCCGGCAGCc -3'
miRNA:   3'- guCCGCGGgaaCCGGU-GGGGCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 8131 0.68 0.16588
Target:  5'- cCAGGUGCCCgagGGCgccaucgagauCGCCCgUGGgGACg -3'
miRNA:   3'- -GUCCGCGGGaa-CCG-----------GUGGG-GCCgUUG- -5'
23051 3' -63.1 NC_005178.1 + 8900 0.66 0.222069
Target:  5'- -uGGCGUCgg-GGCuCACaCCCGGCAcGCg -3'
miRNA:   3'- guCCGCGGgaaCCG-GUG-GGGCCGU-UG- -5'
23051 3' -63.1 NC_005178.1 + 9736 0.66 0.239986
Target:  5'- aAGGUGaccgCCUcGGCCGgCUCGGCGAa -3'
miRNA:   3'- gUCCGCg---GGAaCCGGUgGGGCCGUUg -5'
23051 3' -63.1 NC_005178.1 + 11147 0.76 0.040494
Target:  5'- gCGGGCGCCCUggccGCCGCCCUGGg--- -3'
miRNA:   3'- -GUCCGCGGGAac--CGGUGGGGCCguug -5'
23051 3' -63.1 NC_005178.1 + 11810 0.75 0.045463
Target:  5'- cCAGGaCaCCC-UGGCCGCCCUGGUGACc -3'
miRNA:   3'- -GUCC-GcGGGaACCGGUGGGGCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 12036 0.66 0.222069
Target:  5'- -uGGCGCCUc-GGCUugGCCCUGGCc-- -3'
miRNA:   3'- guCCGCGGGaaCCGG--UGGGGCCGuug -5'
23051 3' -63.1 NC_005178.1 + 12081 0.71 0.090284
Target:  5'- gAGGCGCCa--GGUCauucggaagACCUCGGCAGCa -3'
miRNA:   3'- gUCCGCGGgaaCCGG---------UGGGGCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.