miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23051 3' -63.1 NC_005178.1 + 12386 0.77 0.03118
Target:  5'- -cGGCGgCCUUGGCUcaaccgugcccgACCCCGGUGGCg -3'
miRNA:   3'- guCCGCgGGAACCGG------------UGGGGCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 12940 0.68 0.16588
Target:  5'- -uGGCGCgCCaggugcUGGCCGgCCUGGUGACc -3'
miRNA:   3'- guCCGCG-GGa-----ACCGGUgGGGCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 13028 0.66 0.233883
Target:  5'- aAGGUGCagCUgcUGGCCAgCCUGGcCGAUg -3'
miRNA:   3'- gUCCGCGg-GA--ACCGGUgGGGCC-GUUG- -5'
23051 3' -63.1 NC_005178.1 + 14227 0.7 0.112975
Target:  5'- aGGGCGCCggcaagGGCCGCgUCUGGCAAg -3'
miRNA:   3'- gUCCGCGGgaa---CCGGUG-GGGCCGUUg -5'
23051 3' -63.1 NC_005178.1 + 14949 0.68 0.154606
Target:  5'- aCAGGCGUCCUggacguggucgGGCCGCCauccgcaagcgccugCCGGaCAAg -3'
miRNA:   3'- -GUCCGCGGGAa----------CCGGUGG---------------GGCC-GUUg -5'
23051 3' -63.1 NC_005178.1 + 16482 0.68 0.161023
Target:  5'- -uGGC-CCCUccUGGuccucaaCCGCUCCGGCAACc -3'
miRNA:   3'- guCCGcGGGA--ACC-------GGUGGGGCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 16559 0.7 0.112975
Target:  5'- cCGGGCcgaCC-UGGCCGCCauGGCAACg -3'
miRNA:   3'- -GUCCGcg-GGaACCGGUGGggCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 16904 0.7 0.12623
Target:  5'- -cGGCGCCC-UGGCCGaggcauUCCCGGauaugGACg -3'
miRNA:   3'- guCCGCGGGaACCGGU------GGGGCCg----UUG- -5'
23051 3' -63.1 NC_005178.1 + 17228 0.71 0.101031
Target:  5'- cCAGGCGUgacgCCUUGGCCACCgucagcgcuCgGGCAu- -3'
miRNA:   3'- -GUCCGCG----GGAACCGGUGG---------GgCCGUug -5'
23051 3' -63.1 NC_005178.1 + 17846 0.69 0.129405
Target:  5'- aGGGCGCUCUguaucgGGCUGCcgucgaaCCCGGCAu- -3'
miRNA:   3'- gUCCGCGGGAa-----CCGGUG-------GGGCCGUug -5'
23051 3' -63.1 NC_005178.1 + 17850 0.69 0.148828
Target:  5'- gGGaGCGCCU---GCCGCCCuCGGCGAg -3'
miRNA:   3'- gUC-CGCGGGaacCGGUGGG-GCCGUUg -5'
23051 3' -63.1 NC_005178.1 + 18525 0.66 0.233883
Target:  5'- -cGGgGCUCaacugaGGCCAUCCCGGCc-- -3'
miRNA:   3'- guCCgCGGGaa----CCGGUGGGGCCGuug -5'
23051 3' -63.1 NC_005178.1 + 19742 0.72 0.078374
Target:  5'- -cGGCGCCaucuucUGGCCaaGCCCUGGCAcGCg -3'
miRNA:   3'- guCCGCGGga----ACCGG--UGGGGCCGU-UG- -5'
23051 3' -63.1 NC_005178.1 + 19889 0.66 0.233883
Target:  5'- uGGGCGCCCUauggaUGuGCCGggCUGGCGGa -3'
miRNA:   3'- gUCCGCGGGA-----AC-CGGUggGGCCGUUg -5'
23051 3' -63.1 NC_005178.1 + 20581 0.67 0.198386
Target:  5'- aCGGGCGCCCacuucgccgggucggGGUUACCgggggCGGCGACc -3'
miRNA:   3'- -GUCCGCGGGaa-------------CCGGUGGg----GCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 20804 0.66 0.227912
Target:  5'- gAGGcCGCCCUcgcGGUUugCUCGGCcauGCa -3'
miRNA:   3'- gUCC-GCGGGAa--CCGGugGGGCCGu--UG- -5'
23051 3' -63.1 NC_005178.1 + 21014 0.66 0.222069
Target:  5'- -cGGCGaagaCCUggacguUGGCCGCUaCCGGCAc- -3'
miRNA:   3'- guCCGCg---GGA------ACCGGUGG-GGCCGUug -5'
23051 3' -63.1 NC_005178.1 + 21805 0.66 0.227912
Target:  5'- -cGGUGCCCUUGuuGCuCACCgaGGCAu- -3'
miRNA:   3'- guCCGCGGGAAC--CG-GUGGggCCGUug -5'
23051 3' -63.1 NC_005178.1 + 23272 0.68 0.175048
Target:  5'- uCGGGCGUCCccgaucUGGCCACCCUugacgaaCAGCg -3'
miRNA:   3'- -GUCCGCGGGa-----ACCGGUGGGGcc-----GUUG- -5'
23051 3' -63.1 NC_005178.1 + 23509 0.76 0.037121
Target:  5'- cCGGGCGCCC-UGGCCgucGCCCUGGgcguCGGCg -3'
miRNA:   3'- -GUCCGCGGGaACCGG---UGGGGCC----GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.