Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23051 | 3' | -63.1 | NC_005178.1 | + | 28193 | 0.74 | 0.057246 |
Target: 5'- -cGGCGCCC-UGGCgACUgCUGGCGGCa -3' miRNA: 3'- guCCGCGGGaACCGgUGG-GGCCGUUG- -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 24588 | 0.71 | 0.095515 |
Target: 5'- -cGGCGaCCUgGGCCGCUUCGGCcGCa -3' miRNA: 3'- guCCGCgGGAaCCGGUGGGGCCGuUG- -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 14227 | 0.7 | 0.112975 |
Target: 5'- aGGGCGCCggcaagGGCCGCgUCUGGCAAg -3' miRNA: 3'- gUCCGCGGgaa---CCGGUG-GGGCCGUUg -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 16559 | 0.7 | 0.112975 |
Target: 5'- cCGGGCcgaCC-UGGCCGCCauGGCAACg -3' miRNA: 3'- -GUCCGcg-GGaACCGGUGGggCCGUUG- -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 16482 | 0.68 | 0.161023 |
Target: 5'- -uGGC-CCCUccUGGuccucaaCCGCUCCGGCAACc -3' miRNA: 3'- guCCGcGGGA--ACC-------GGUGGGGCCGUUG- -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 14949 | 0.68 | 0.154606 |
Target: 5'- aCAGGCGUCCUggacguggucgGGCCGCCauccgcaagcgccugCCGGaCAAg -3' miRNA: 3'- -GUCCGCGGGAa----------CCGGUGG---------------GGCC-GUUg -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 17850 | 0.69 | 0.148828 |
Target: 5'- gGGaGCGCCU---GCCGCCCuCGGCGAg -3' miRNA: 3'- gUC-CGCGGGaacCGGUGGG-GCCGUUg -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 34970 | 0.69 | 0.140913 |
Target: 5'- gAGcGCGUCCUacuUGGCCGCgCUGGCcgaGGCg -3' miRNA: 3'- gUC-CGCGGGA---ACCGGUGgGGCCG---UUG- -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 16904 | 0.7 | 0.12623 |
Target: 5'- -cGGCGCCC-UGGCCGaggcauUCCCGGauaugGACg -3' miRNA: 3'- guCCGCGGGaACCGGU------GGGGCCg----UUG- -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 5809 | 0.7 | 0.119432 |
Target: 5'- aCGGucGUGCCCgaGGCCGCCaCCGauGCGGCg -3' miRNA: 3'- -GUC--CGCGGGaaCCGGUGG-GGC--CGUUG- -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 27731 | 0.7 | 0.119432 |
Target: 5'- -cGGCGCUgUUGcgcGCCcauGCCCaCGGCAGCg -3' miRNA: 3'- guCCGCGGgAAC---CGG---UGGG-GCCGUUG- -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 5000 | 0.7 | 0.116162 |
Target: 5'- gCGGGCgGCCgCUggcGGCCAguuCCUCGGCGAUc -3' miRNA: 3'- -GUCCG-CGG-GAa--CCGGU---GGGGCCGUUG- -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 17228 | 0.71 | 0.101031 |
Target: 5'- cCAGGCGUgacgCCUUGGCCACCgucagcgcuCgGGCAu- -3' miRNA: 3'- -GUCCGCG----GGAACCGGUGG---------GgCCGUug -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 26167 | 0.71 | 0.098236 |
Target: 5'- -uGGCGUUgUUGGCCgacGCUgCGGCAGCg -3' miRNA: 3'- guCCGCGGgAACCGG---UGGgGCCGUUG- -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 12081 | 0.71 | 0.090284 |
Target: 5'- gAGGCGCCa--GGUCauucggaagACCUCGGCAGCa -3' miRNA: 3'- gUCCGCGGgaaCCGG---------UGGGGCCGUUG- -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 8066 | 0.72 | 0.085327 |
Target: 5'- -cGGUGUCag-GGUCAgCCCCGGCAGCc -3' miRNA: 3'- guCCGCGGgaaCCGGU-GGGGCCGUUG- -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 19742 | 0.72 | 0.078374 |
Target: 5'- -cGGCGCCaucuucUGGCCaaGCCCUGGCAcGCg -3' miRNA: 3'- guCCGCGGga----ACCGG--UGGGGCCGU-UG- -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 26671 | 0.74 | 0.062388 |
Target: 5'- aUAGGCGUCCaUGGCCAgUUgGGCGGCc -3' miRNA: 3'- -GUCCGCGGGaACCGGUgGGgCCGUUG- -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 23509 | 0.76 | 0.037121 |
Target: 5'- cCGGGCGCCC-UGGCCgucGCCCUGGgcguCGGCg -3' miRNA: 3'- -GUCCGCGGGaACCGG---UGGGGCC----GUUG- -5' |
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23051 | 3' | -63.1 | NC_005178.1 | + | 25579 | 0.66 | 0.248752 |
Target: 5'- aCGGGCGCUUUccugccauccgcuggUGGCUGCCCgcgUGGCggUg -3' miRNA: 3'- -GUCCGCGGGA---------------ACCGGUGGG---GCCGuuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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