miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23051 3' -63.1 NC_005178.1 + 6064 0.67 0.194746
Target:  5'- -cGGUGCCgaggggUGGCCGCCCCu-CGACa -3'
miRNA:   3'- guCCGCGGga----ACCGGUGGGGccGUUG- -5'
23051 3' -63.1 NC_005178.1 + 12386 0.77 0.03118
Target:  5'- -cGGCGgCCUUGGCUcaaccgugcccgACCCCGGUGGCg -3'
miRNA:   3'- guCCGCgGGAACCGG------------UGGGGCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 28193 0.74 0.057246
Target:  5'- -cGGCGCCC-UGGCgACUgCUGGCGGCa -3'
miRNA:   3'- guCCGCGGGaACCGgUGG-GGCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 24588 0.71 0.095515
Target:  5'- -cGGCGaCCUgGGCCGCUUCGGCcGCa -3'
miRNA:   3'- guCCGCgGGAaCCGGUGGGGCCGuUG- -5'
23051 3' -63.1 NC_005178.1 + 14227 0.7 0.112975
Target:  5'- aGGGCGCCggcaagGGCCGCgUCUGGCAAg -3'
miRNA:   3'- gUCCGCGGgaa---CCGGUG-GGGCCGUUg -5'
23051 3' -63.1 NC_005178.1 + 11810 0.75 0.045463
Target:  5'- cCAGGaCaCCC-UGGCCGCCCUGGUGACc -3'
miRNA:   3'- -GUCC-GcGGGaACCGGUGGGGCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 8131 0.68 0.16588
Target:  5'- cCAGGUGCCCgagGGCgccaucgagauCGCCCgUGGgGACg -3'
miRNA:   3'- -GUCCGCGGGaa-CCG-----------GUGGG-GCCgUUG- -5'
23051 3' -63.1 NC_005178.1 + 28145 0.68 0.16588
Target:  5'- -cGGCGCCCaggGGCUgacggucggcGCCUCGGCu-- -3'
miRNA:   3'- guCCGCGGGaa-CCGG----------UGGGGCCGuug -5'
23051 3' -63.1 NC_005178.1 + 307 0.68 0.175048
Target:  5'- gCAGGCGCUUUgcauagagaUGGUCAUCCaGGCGAa -3'
miRNA:   3'- -GUCCGCGGGA---------ACCGGUGGGgCCGUUg -5'
23051 3' -63.1 NC_005178.1 + 23272 0.68 0.175048
Target:  5'- uCGGGCGUCCccgaucUGGCCACCCUugacgaaCAGCg -3'
miRNA:   3'- -GUCCGCGGGa-----ACCGGUGGGGcc-----GUUG- -5'
23051 3' -63.1 NC_005178.1 + 33894 0.76 0.037121
Target:  5'- aGGGCGUCCU--GCCGCgCCUGGCGGCg -3'
miRNA:   3'- gUCCGCGGGAacCGGUG-GGGCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 28969 0.67 0.194746
Target:  5'- cCAGGUGaCCCUgcgcGCCccugGCCUgGGCGGCa -3'
miRNA:   3'- -GUCCGC-GGGAac--CGG----UGGGgCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 5859 0.67 0.199965
Target:  5'- cCAGGCcgcuacaccgGCCCUcGGCCGCCCaucgucCAGCg -3'
miRNA:   3'- -GUCCG----------CGGGAaCCGGUGGGgcc---GUUG- -5'
23051 3' -63.1 NC_005178.1 + 31169 0.67 0.205305
Target:  5'- uGGGCGagccggaCCUgguccUGGUCAUCaCCGGCAAUc -3'
miRNA:   3'- gUCCGCg------GGA-----ACCGGUGG-GGCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 12036 0.66 0.222069
Target:  5'- -uGGCGCCUc-GGCUugGCCCUGGCc-- -3'
miRNA:   3'- guCCGCGGGaaCCGG--UGGGGCCGuug -5'
23051 3' -63.1 NC_005178.1 + 20804 0.66 0.227912
Target:  5'- gAGGcCGCCCUcgcGGUUugCUCGGCcauGCa -3'
miRNA:   3'- gUCC-GCGGGAa--CCGGugGGGCCGu--UG- -5'
23051 3' -63.1 NC_005178.1 + 4251 0.66 0.227912
Target:  5'- aAGcGCGCCC-UGGCuCACCUCGaCGAg -3'
miRNA:   3'- gUC-CGCGGGaACCG-GUGGGGCcGUUg -5'
23051 3' -63.1 NC_005178.1 + 19889 0.66 0.233883
Target:  5'- uGGGCGCCCUauggaUGuGCCGggCUGGCGGa -3'
miRNA:   3'- gUCCGCGGGA-----AC-CGGUggGGCCGUUg -5'
23051 3' -63.1 NC_005178.1 + 13028 0.66 0.233883
Target:  5'- aAGGUGCagCUgcUGGCCAgCCUGGcCGAUg -3'
miRNA:   3'- gUCCGCGg-GA--ACCGGUgGGGCC-GUUG- -5'
23051 3' -63.1 NC_005178.1 + 2739 0.66 0.239986
Target:  5'- uGGGCGagg-UGGCCACCaaGGCGGu -3'
miRNA:   3'- gUCCGCgggaACCGGUGGggCCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.