miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23051 3' -63.1 NC_005178.1 + 27731 0.7 0.119432
Target:  5'- -cGGCGCUgUUGcgcGCCcauGCCCaCGGCAGCg -3'
miRNA:   3'- guCCGCGGgAAC---CGG---UGGG-GCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 6134 0.66 0.246221
Target:  5'- gUAGGUGUCgaggggcGGCCACCCCucGGCAc- -3'
miRNA:   3'- -GUCCGCGGgaa----CCGGUGGGG--CCGUug -5'
23051 3' -63.1 NC_005178.1 + 21805 0.66 0.227912
Target:  5'- -cGGUGCCCUUGuuGCuCACCgaGGCAu- -3'
miRNA:   3'- guCCGCGGGAAC--CG-GUGGggCCGUug -5'
23051 3' -63.1 NC_005178.1 + 9736 0.66 0.239986
Target:  5'- aAGGUGaccgCCUcGGCCGgCUCGGCGAa -3'
miRNA:   3'- gUCCGCg---GGAaCCGGUgGGGCCGUUg -5'
23051 3' -63.1 NC_005178.1 + 31852 0.66 0.2357
Target:  5'- cCGGGUGCUgCUccagcacUGGCCGCCCCcuguaggucgucgccGGCAu- -3'
miRNA:   3'- -GUCCGCGG-GA-------ACCGGUGGGG---------------CCGUug -5'
23051 3' -63.1 NC_005178.1 + 18525 0.66 0.233883
Target:  5'- -cGGgGCUCaacugaGGCCAUCCCGGCc-- -3'
miRNA:   3'- guCCgCGGGaa----CCGGUGGGGCCGuug -5'
23051 3' -63.1 NC_005178.1 + 26888 0.66 0.245591
Target:  5'- aCGGGCcgaagacaGCCCcgcUGGCCACagcgcguCCCGGCu-- -3'
miRNA:   3'- -GUCCG--------CGGGa--ACCGGUG-------GGGCCGuug -5'
23051 3' -63.1 NC_005178.1 + 3823 0.69 0.144821
Target:  5'- uGGuGcCGCCCUUGGCgAUggCCCGGCGc- -3'
miRNA:   3'- gUC-C-GCGGGAACCGgUG--GGGCCGUug -5'
23051 3' -63.1 NC_005178.1 + 17846 0.69 0.129405
Target:  5'- aGGGCGCUCUguaucgGGCUGCcgucgaaCCCGGCAu- -3'
miRNA:   3'- gUCCGCGGGAa-----CCGGUG-------GGGCCGUug -5'
23051 3' -63.1 NC_005178.1 + 5809 0.7 0.119432
Target:  5'- aCGGucGUGCCCgaGGCCGCCaCCGauGCGGCg -3'
miRNA:   3'- -GUC--CGCGGGaaCCGGUGG-GGC--CGUUG- -5'
23051 3' -63.1 NC_005178.1 + 29026 0.68 0.16588
Target:  5'- gGGGCGCgCagGGUCACCUggcgcaCGGCGAUg -3'
miRNA:   3'- gUCCGCGgGaaCCGGUGGG------GCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 5000 0.7 0.116162
Target:  5'- gCGGGCgGCCgCUggcGGCCAguuCCUCGGCGAUc -3'
miRNA:   3'- -GUCCG-CGG-GAa--CCGGU---GGGGCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 17228 0.71 0.101031
Target:  5'- cCAGGCGUgacgCCUUGGCCACCgucagcgcuCgGGCAu- -3'
miRNA:   3'- -GUCCGCG----GGAACCGGUGG---------GgCCGUug -5'
23051 3' -63.1 NC_005178.1 + 26167 0.71 0.098236
Target:  5'- -uGGCGUUgUUGGCCgacGCUgCGGCAGCg -3'
miRNA:   3'- guCCGCGGgAACCGG---UGGgGCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 12081 0.71 0.090284
Target:  5'- gAGGCGCCa--GGUCauucggaagACCUCGGCAGCa -3'
miRNA:   3'- gUCCGCGGgaaCCGG---------UGGGGCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 8066 0.72 0.085327
Target:  5'- -cGGUGUCag-GGUCAgCCCCGGCAGCc -3'
miRNA:   3'- guCCGCGGgaaCCGGU-GGGGCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 19742 0.72 0.078374
Target:  5'- -cGGCGCCaucuucUGGCCaaGCCCUGGCAcGCg -3'
miRNA:   3'- guCCGCGGga----ACCGG--UGGGGCCGU-UG- -5'
23051 3' -63.1 NC_005178.1 + 26671 0.74 0.062388
Target:  5'- aUAGGCGUCCaUGGCCAgUUgGGCGGCc -3'
miRNA:   3'- -GUCCGCGGGaACCGGUgGGgCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 23509 0.76 0.037121
Target:  5'- cCGGGCGCCC-UGGCCgucGCCCUGGgcguCGGCg -3'
miRNA:   3'- -GUCCGCGGGaACCGG---UGGGGCC----GUUG- -5'
23051 3' -63.1 NC_005178.1 + 26770 1.09 9.1e-05
Target:  5'- cCAGGCGCCCUUGGCCACCCCGGCAACg -3'
miRNA:   3'- -GUCCGCGGGAACCGGUGGGGCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.