miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23051 3' -63.1 NC_005178.1 + 36065 0.66 0.222069
Target:  5'- aAGuGuCGCCCUcGGCCugGCCggaagUCGGCAGCg -3'
miRNA:   3'- gUC-C-GCGGGAaCCGG--UGG-----GGCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 34970 0.69 0.140913
Target:  5'- gAGcGCGUCCUacuUGGCCGCgCUGGCcgaGGCg -3'
miRNA:   3'- gUC-CGCGGGA---ACCGGUGgGGCCG---UUG- -5'
23051 3' -63.1 NC_005178.1 + 33894 0.76 0.037121
Target:  5'- aGGGCGUCCU--GCCGCgCCUGGCGGCg -3'
miRNA:   3'- gUCCGCGGGAacCGGUG-GGGCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 31852 0.66 0.2357
Target:  5'- cCGGGUGCUgCUccagcacUGGCCGCCCCcuguaggucgucgccGGCAu- -3'
miRNA:   3'- -GUCCGCGG-GA-------ACCGGUGGGG---------------CCGUug -5'
23051 3' -63.1 NC_005178.1 + 31169 0.67 0.205305
Target:  5'- uGGGCGagccggaCCUgguccUGGUCAUCaCCGGCAAUc -3'
miRNA:   3'- gUCCGCg------GGA-----ACCGGUGG-GGCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 29026 0.68 0.16588
Target:  5'- gGGGCGCgCagGGUCACCUggcgcaCGGCGAUg -3'
miRNA:   3'- gUCCGCGgGaaCCGGUGGG------GCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 28969 0.67 0.194746
Target:  5'- cCAGGUGaCCCUgcgcGCCccugGCCUgGGCGGCa -3'
miRNA:   3'- -GUCCGC-GGGAac--CGG----UGGGgCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 28193 0.74 0.057246
Target:  5'- -cGGCGCCC-UGGCgACUgCUGGCGGCa -3'
miRNA:   3'- guCCGCGGGaACCGgUGG-GGCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 28145 0.68 0.16588
Target:  5'- -cGGCGCCCaggGGCUgacggucggcGCCUCGGCu-- -3'
miRNA:   3'- guCCGCGGGaa-CCGG----------UGGGGCCGuug -5'
23051 3' -63.1 NC_005178.1 + 27731 0.7 0.119432
Target:  5'- -cGGCGCUgUUGcgcGCCcauGCCCaCGGCAGCg -3'
miRNA:   3'- guCCGCGGgAAC---CGG---UGGG-GCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 26888 0.66 0.245591
Target:  5'- aCGGGCcgaagacaGCCCcgcUGGCCACagcgcguCCCGGCu-- -3'
miRNA:   3'- -GUCCG--------CGGGa--ACCGGUG-------GGGCCGuug -5'
23051 3' -63.1 NC_005178.1 + 26770 1.09 0.000091
Target:  5'- cCAGGCGCCCUUGGCCACCCCGGCAACg -3'
miRNA:   3'- -GUCCGCGGGAACCGGUGGGGCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 26671 0.74 0.062388
Target:  5'- aUAGGCGUCCaUGGCCAgUUgGGCGGCc -3'
miRNA:   3'- -GUCCGCGGGaACCGGUgGGgCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 26167 0.71 0.098236
Target:  5'- -uGGCGUUgUUGGCCgacGCUgCGGCAGCg -3'
miRNA:   3'- guCCGCGGgAACCGG---UGGgGCCGUUG- -5'
23051 3' -63.1 NC_005178.1 + 25579 0.66 0.248752
Target:  5'- aCGGGCGCUUUccugccauccgcuggUGGCUGCCCgcgUGGCggUg -3'
miRNA:   3'- -GUCCGCGGGA---------------ACCGGUGGG---GCCGuuG- -5'
23051 3' -63.1 NC_005178.1 + 24588 0.71 0.095515
Target:  5'- -cGGCGaCCUgGGCCGCUUCGGCcGCa -3'
miRNA:   3'- guCCGCgGGAaCCGGUGGGGCCGuUG- -5'
23051 3' -63.1 NC_005178.1 + 23509 0.76 0.037121
Target:  5'- cCGGGCGCCC-UGGCCgucGCCCUGGgcguCGGCg -3'
miRNA:   3'- -GUCCGCGGGaACCGG---UGGGGCC----GUUG- -5'
23051 3' -63.1 NC_005178.1 + 23272 0.68 0.175048
Target:  5'- uCGGGCGUCCccgaucUGGCCACCCUugacgaaCAGCg -3'
miRNA:   3'- -GUCCGCGGGa-----ACCGGUGGGGcc-----GUUG- -5'
23051 3' -63.1 NC_005178.1 + 21805 0.66 0.227912
Target:  5'- -cGGUGCCCUUGuuGCuCACCgaGGCAu- -3'
miRNA:   3'- guCCGCGGGAAC--CG-GUGGggCCGUug -5'
23051 3' -63.1 NC_005178.1 + 21014 0.66 0.222069
Target:  5'- -cGGCGaagaCCUggacguUGGCCGCUaCCGGCAc- -3'
miRNA:   3'- guCCGCg---GGA------ACCGGUGG-GGCCGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.