miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23055 3' -53.5 NC_005178.1 + 30720 1.09 0.00096
Target:  5'- uCACCCGGAAGCAAUAACCGACCCAGGc -3'
miRNA:   3'- -GUGGGCCUUCGUUAUUGGCUGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 29013 0.78 0.150436
Target:  5'- uCACCUGGcgcacGGCGAUGGCCGugCCGGa -3'
miRNA:   3'- -GUGGGCCu----UCGUUAUUGGCugGGUCc -5'
23055 3' -53.5 NC_005178.1 + 22066 0.73 0.329543
Target:  5'- aGCCCaGGAAGCA---GCCGGaauucguuuCCCAGGu -3'
miRNA:   3'- gUGGG-CCUUCGUuauUGGCU---------GGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 16190 0.73 0.337911
Target:  5'- cCugCUGcGAGCGGUGACCGGCCUcGGc -3'
miRNA:   3'- -GugGGCcUUCGUUAUUGGCUGGGuCC- -5'
23055 3' -53.5 NC_005178.1 + 8986 0.73 0.346433
Target:  5'- aCACCCccagcgcacGGAAGCcgggccGAUccuGCUGGCCCAGGg -3'
miRNA:   3'- -GUGGG---------CCUUCG------UUAu--UGGCUGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 36098 0.72 0.355107
Target:  5'- cUAUCUGGGAGUAcauGCCG-CCCAGGu -3'
miRNA:   3'- -GUGGGCCUUCGUuauUGGCuGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 3981 0.72 0.355107
Target:  5'- gGCCCGGccGCuuu--CCGAcCCCAGGu -3'
miRNA:   3'- gUGGGCCuuCGuuauuGGCU-GGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 7512 0.72 0.372005
Target:  5'- uGCCCuGGAAGCGggugauguaacggGUGcuGCCGGCCgAGGc -3'
miRNA:   3'- gUGGG-CCUUCGU-------------UAU--UGGCUGGgUCC- -5'
23055 3' -53.5 NC_005178.1 + 35604 0.72 0.37291
Target:  5'- gGCCCGGAAGCug-GGgCGACggugacgcuCCAGGu -3'
miRNA:   3'- gUGGGCCUUCGuuaUUgGCUG---------GGUCC- -5'
23055 3' -53.5 NC_005178.1 + 23465 0.72 0.37291
Target:  5'- gCGCCCGGc-GCGA-AGCCGGCCCGc- -3'
miRNA:   3'- -GUGGGCCuuCGUUaUUGGCUGGGUcc -5'
23055 3' -53.5 NC_005178.1 + 33907 0.72 0.390376
Target:  5'- gCGCCUGGcGGCGAUGcucggcggccgguGCCGGCuuuCCGGGg -3'
miRNA:   3'- -GUGGGCCuUCGUUAU-------------UGGCUG---GGUCC- -5'
23055 3' -53.5 NC_005178.1 + 28122 0.71 0.410292
Target:  5'- gGCCUGGGcgguGGCAccgAUGGCgGcGCCCAGGg -3'
miRNA:   3'- gUGGGCCU----UCGU---UAUUGgC-UGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 4873 0.71 0.423915
Target:  5'- gGCCUGGAcguaguaggcgcggcGGCGAUuGgCGAUCCAGGc -3'
miRNA:   3'- gUGGGCCU---------------UCGUUAuUgGCUGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 33104 0.71 0.449916
Target:  5'- cCugCCGGAAuGCccucgguGCCG-CCCAGGa -3'
miRNA:   3'- -GugGGCCUU-CGuuau---UGGCuGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 33557 0.71 0.449916
Target:  5'- cCugCCGGuGGCAGUAGCCcugucgaguGGUCCAGGu -3'
miRNA:   3'- -GugGGCCuUCGUUAUUGG---------CUGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 5228 0.7 0.460148
Target:  5'- cCACuCCGG-GGCuguaGACCGGCgCCAGGu -3'
miRNA:   3'- -GUG-GGCCuUCGuua-UUGGCUG-GGUCC- -5'
23055 3' -53.5 NC_005178.1 + 4400 0.7 0.470502
Target:  5'- uGCUCGGggGUGAUcguGCCGAggCCGGGg -3'
miRNA:   3'- gUGGGCCuuCGUUAu--UGGCUg-GGUCC- -5'
23055 3' -53.5 NC_005178.1 + 30790 0.7 0.470502
Target:  5'- cCGCCUGGcAGCGGUcgcGGCCucGACCUGGGc -3'
miRNA:   3'- -GUGGGCCuUCGUUA---UUGG--CUGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 6696 0.7 0.502247
Target:  5'- gCGCCUGGAccgGGCGGccucacuGCUGAgCCAGGa -3'
miRNA:   3'- -GUGGGCCU---UCGUUau-----UGGCUgGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 16797 0.69 0.510872
Target:  5'- uCACCUGGGccagcgcAGCGAUGcgaggaccagggcGCCGGCUCAGu -3'
miRNA:   3'- -GUGGGCCU-------UCGUUAU-------------UGGCUGGGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.