miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23055 3' -53.5 NC_005178.1 + 1453 0.68 0.579499
Target:  5'- aUACCUGGugaguGCAAcuacGCCG-CCCAGGu -3'
miRNA:   3'- -GUGGGCCuu---CGUUau--UGGCuGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 3981 0.72 0.355107
Target:  5'- gGCCCGGccGCuuu--CCGAcCCCAGGu -3'
miRNA:   3'- gUGGGCCuuCGuuauuGGCU-GGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 4400 0.7 0.470502
Target:  5'- uGCUCGGggGUGAUcguGCCGAggCCGGGg -3'
miRNA:   3'- gUGGGCCuuCGUUAu--UGGCUg-GGUCC- -5'
23055 3' -53.5 NC_005178.1 + 4873 0.71 0.423915
Target:  5'- gGCCUGGAcguaguaggcgcggcGGCGAUuGgCGAUCCAGGc -3'
miRNA:   3'- gUGGGCCU---------------UCGUUAuUgGCUGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 5228 0.7 0.460148
Target:  5'- cCACuCCGG-GGCuguaGACCGGCgCCAGGu -3'
miRNA:   3'- -GUG-GGCCuUCGuua-UUGGCUG-GGUCC- -5'
23055 3' -53.5 NC_005178.1 + 5260 0.66 0.715113
Target:  5'- aACCUGG-AGCAGUuGGCCGAggccgccaccgUUCAGGg -3'
miRNA:   3'- gUGGGCCuUCGUUA-UUGGCU-----------GGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 5974 0.66 0.737051
Target:  5'- aACCCGGAgucguuccggGGC----GCUGcCCCAGGc -3'
miRNA:   3'- gUGGGCCU----------UCGuuauUGGCuGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 6696 0.7 0.502247
Target:  5'- gCGCCUGGAccgGGCGGccucacuGCUGAgCCAGGa -3'
miRNA:   3'- -GUGGGCCU---UCGUUau-----UGGCUgGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 7512 0.72 0.372005
Target:  5'- uGCCCuGGAAGCGggugauguaacggGUGcuGCCGGCCgAGGc -3'
miRNA:   3'- gUGGG-CCUUCGU-------------UAU--UGGCUGGgUCC- -5'
23055 3' -53.5 NC_005178.1 + 7965 0.68 0.621428
Target:  5'- aACaaGGAAGCGAUccucaagaacccgaGGCCG-UCCAGGg -3'
miRNA:   3'- gUGggCCUUCGUUA--------------UUGGCuGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 8886 0.69 0.513038
Target:  5'- aCACCCGGcacgcgccGGGCGAcuuucuuGCCGACCUGGu -3'
miRNA:   3'- -GUGGGCC--------UUCGUUau-----UGGCUGGGUCc -5'
23055 3' -53.5 NC_005178.1 + 8904 0.68 0.579499
Target:  5'- gACCCuGGGccAGCAG-GAUCGGCCCGGc -3'
miRNA:   3'- gUGGG-CCU--UCGUUaUUGGCUGGGUCc -5'
23055 3' -53.5 NC_005178.1 + 8977 0.68 0.590788
Target:  5'- uCACCCGGAcagagcuacGGCGccguagacgucgAUAGCCGACuCCGc- -3'
miRNA:   3'- -GUGGGCCU---------UCGU------------UAUUGGCUG-GGUcc -5'
23055 3' -53.5 NC_005178.1 + 8986 0.73 0.346433
Target:  5'- aCACCCccagcgcacGGAAGCcgggccGAUccuGCUGGCCCAGGg -3'
miRNA:   3'- -GUGGG---------CCUUCG------UUAu--UGGCUGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 9660 0.67 0.63622
Target:  5'- gCGgCCGGuGGCuucgccgAGCCGGCCgAGGc -3'
miRNA:   3'- -GUgGGCCuUCGuua----UUGGCUGGgUCC- -5'
23055 3' -53.5 NC_005178.1 + 10296 0.66 0.737051
Target:  5'- aGCUCGGcGGCAcguccuggcggAUAGCCGAgggCCGGGc -3'
miRNA:   3'- gUGGGCCuUCGU-----------UAUUGGCUg--GGUCC- -5'
23055 3' -53.5 NC_005178.1 + 12413 0.66 0.714006
Target:  5'- -cCCCGGuGGCGGUGACUGAugacaacCCCGa- -3'
miRNA:   3'- guGGGCCuUCGUUAUUGGCU-------GGGUcc -5'
23055 3' -53.5 NC_005178.1 + 13152 0.68 0.568256
Target:  5'- uCAUCCGuGAGCGGUucCCGcagcacGCCCAGGc -3'
miRNA:   3'- -GUGGGCcUUCGUUAuuGGC------UGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 16190 0.73 0.337911
Target:  5'- cCugCUGcGAGCGGUGACCGGCCUcGGc -3'
miRNA:   3'- -GugGGCcUUCGUUAUUGGCUGGGuCC- -5'
23055 3' -53.5 NC_005178.1 + 16724 0.67 0.670286
Target:  5'- gCGCCCuGGuccucGCAucgcugcGCUGGCCCAGGu -3'
miRNA:   3'- -GUGGG-CCuu---CGUuau----UGGCUGGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.