Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23055 | 3' | -53.5 | NC_005178.1 | + | 16787 | 0.69 | 0.52283 |
Target: 5'- aGCgCUGGAccaggugcuggccAGCcu--GCCGGCCCAGGa -3' miRNA: 3'- gUG-GGCCU-------------UCGuuauUGGCUGGGUCC- -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 16797 | 0.69 | 0.510872 |
Target: 5'- uCACCUGGGccagcgcAGCGAUGcgaggaccagggcGCCGGCUCAGu -3' miRNA: 3'- -GUGGGCCU-------UCGUUAU-------------UGGCUGGGUCc -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 17703 | 0.69 | 0.534894 |
Target: 5'- gAUUCGGGAGCAGaccuUGACC-ACCCuGGa -3' miRNA: 3'- gUGGGCCUUCGUU----AUUGGcUGGGuCC- -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 17819 | 0.69 | 0.541515 |
Target: 5'- aACCCGGcaucgGGGCGAaauuggaucuuccGACCGGCCCGGu -3' miRNA: 3'- gUGGGCC-----UUCGUUa------------UUGGCUGGGUCc -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 17843 | 0.68 | 0.602115 |
Target: 5'- gCACCCuGGGAGCGccuGCCG-CCCucGGc -3' miRNA: 3'- -GUGGG-CCUUCGUuauUGGCuGGGu-CC- -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 17909 | 0.67 | 0.658953 |
Target: 5'- gCGCCUGGcAGGCGuuugugGACCGcuccacgucgcCCCAGGg -3' miRNA: 3'- -GUGGGCC-UUCGUua----UUGGCu----------GGGUCC- -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 20382 | 0.66 | 0.726132 |
Target: 5'- cCGCCCuGAAGCc--GGCCcuggacGCCCAGGc -3' miRNA: 3'- -GUGGGcCUUCGuuaUUGGc-----UGGGUCC- -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 20451 | 0.68 | 0.602115 |
Target: 5'- uCGCCUGGgcGUccagGGCCGGCUuCAGGg -3' miRNA: 3'- -GUGGGCCuuCGuua-UUGGCUGG-GUCC- -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 20806 | 0.67 | 0.674809 |
Target: 5'- aCGCCCGGcgcucuGcuguugggucagggcGGCGAUGggcuugGCCuGGCCCAGGu -3' miRNA: 3'- -GUGGGCC------U---------------UCGUUAU------UGG-CUGGGUCC- -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 20870 | 0.66 | 0.726132 |
Target: 5'- gGCCaguaaGGAGGCGcuAUGACCG-CCCuGa -3' miRNA: 3'- gUGGg----CCUUCGU--UAUUGGCuGGGuCc -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 21075 | 0.66 | 0.737051 |
Target: 5'- aGgCCGGuGGCGGUGcuGCCG-CCCAcGGc -3' miRNA: 3'- gUgGGCCuUCGUUAU--UGGCuGGGU-CC- -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 21277 | 0.67 | 0.658953 |
Target: 5'- gGCCgGGGAGCGGguuucgguGCCGuCCguGGc -3' miRNA: 3'- gUGGgCCUUCGUUau------UGGCuGGguCC- -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 21690 | 0.67 | 0.63622 |
Target: 5'- -gUCCGGGAGCugagccgccgAGUAACCGgccaucuucGCCUGGGg -3' miRNA: 3'- guGGGCCUUCG----------UUAUUGGC---------UGGGUCC- -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 22066 | 0.73 | 0.329543 |
Target: 5'- aGCCCaGGAAGCA---GCCGGaauucguuuCCCAGGu -3' miRNA: 3'- gUGGG-CCUUCGUuauUGGCU---------GGGUCC- -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 22225 | 0.66 | 0.726132 |
Target: 5'- gCugCCaGAAGCcGUAACCGGCagcagcgCGGGc -3' miRNA: 3'- -GugGGcCUUCGuUAUUGGCUGg------GUCC- -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 22521 | 0.67 | 0.670286 |
Target: 5'- aCACCCaGGAauaacccaccccAGCAGaggGACCGcCCCuGGc -3' miRNA: 3'- -GUGGG-CCU------------UCGUUa--UUGGCuGGGuCC- -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 23124 | 0.66 | 0.726132 |
Target: 5'- -uCCCGGAGGaaau-ACCG-CCCAGc -3' miRNA: 3'- guGGGCCUUCguuauUGGCuGGGUCc -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 23175 | 0.66 | 0.737051 |
Target: 5'- gCACCUGGuGAGCAcu-GCCGAgCCGu- -3' miRNA: 3'- -GUGGGCC-UUCGUuauUGGCUgGGUcc -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 23337 | 0.66 | 0.726132 |
Target: 5'- cUACCUGGgcGaCGA-GAUCGGCaCCGGGg -3' miRNA: 3'- -GUGGGCCuuC-GUUaUUGGCUG-GGUCC- -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 23465 | 0.72 | 0.37291 |
Target: 5'- gCGCCCGGc-GCGA-AGCCGGCCCGc- -3' miRNA: 3'- -GUGGGCCuuCGUUaUUGGCUGGGUcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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