miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23055 3' -53.5 NC_005178.1 + 16787 0.69 0.52283
Target:  5'- aGCgCUGGAccaggugcuggccAGCcu--GCCGGCCCAGGa -3'
miRNA:   3'- gUG-GGCCU-------------UCGuuauUGGCUGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 16797 0.69 0.510872
Target:  5'- uCACCUGGGccagcgcAGCGAUGcgaggaccagggcGCCGGCUCAGu -3'
miRNA:   3'- -GUGGGCCU-------UCGUUAU-------------UGGCUGGGUCc -5'
23055 3' -53.5 NC_005178.1 + 17703 0.69 0.534894
Target:  5'- gAUUCGGGAGCAGaccuUGACC-ACCCuGGa -3'
miRNA:   3'- gUGGGCCUUCGUU----AUUGGcUGGGuCC- -5'
23055 3' -53.5 NC_005178.1 + 17819 0.69 0.541515
Target:  5'- aACCCGGcaucgGGGCGAaauuggaucuuccGACCGGCCCGGu -3'
miRNA:   3'- gUGGGCC-----UUCGUUa------------UUGGCUGGGUCc -5'
23055 3' -53.5 NC_005178.1 + 17843 0.68 0.602115
Target:  5'- gCACCCuGGGAGCGccuGCCG-CCCucGGc -3'
miRNA:   3'- -GUGGG-CCUUCGUuauUGGCuGGGu-CC- -5'
23055 3' -53.5 NC_005178.1 + 17909 0.67 0.658953
Target:  5'- gCGCCUGGcAGGCGuuugugGACCGcuccacgucgcCCCAGGg -3'
miRNA:   3'- -GUGGGCC-UUCGUua----UUGGCu----------GGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 20382 0.66 0.726132
Target:  5'- cCGCCCuGAAGCc--GGCCcuggacGCCCAGGc -3'
miRNA:   3'- -GUGGGcCUUCGuuaUUGGc-----UGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 20451 0.68 0.602115
Target:  5'- uCGCCUGGgcGUccagGGCCGGCUuCAGGg -3'
miRNA:   3'- -GUGGGCCuuCGuua-UUGGCUGG-GUCC- -5'
23055 3' -53.5 NC_005178.1 + 20806 0.67 0.674809
Target:  5'- aCGCCCGGcgcucuGcuguugggucagggcGGCGAUGggcuugGCCuGGCCCAGGu -3'
miRNA:   3'- -GUGGGCC------U---------------UCGUUAU------UGG-CUGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 20870 0.66 0.726132
Target:  5'- gGCCaguaaGGAGGCGcuAUGACCG-CCCuGa -3'
miRNA:   3'- gUGGg----CCUUCGU--UAUUGGCuGGGuCc -5'
23055 3' -53.5 NC_005178.1 + 21075 0.66 0.737051
Target:  5'- aGgCCGGuGGCGGUGcuGCCG-CCCAcGGc -3'
miRNA:   3'- gUgGGCCuUCGUUAU--UGGCuGGGU-CC- -5'
23055 3' -53.5 NC_005178.1 + 21277 0.67 0.658953
Target:  5'- gGCCgGGGAGCGGguuucgguGCCGuCCguGGc -3'
miRNA:   3'- gUGGgCCUUCGUUau------UGGCuGGguCC- -5'
23055 3' -53.5 NC_005178.1 + 21690 0.67 0.63622
Target:  5'- -gUCCGGGAGCugagccgccgAGUAACCGgccaucuucGCCUGGGg -3'
miRNA:   3'- guGGGCCUUCG----------UUAUUGGC---------UGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 22066 0.73 0.329543
Target:  5'- aGCCCaGGAAGCA---GCCGGaauucguuuCCCAGGu -3'
miRNA:   3'- gUGGG-CCUUCGUuauUGGCU---------GGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 22225 0.66 0.726132
Target:  5'- gCugCCaGAAGCcGUAACCGGCagcagcgCGGGc -3'
miRNA:   3'- -GugGGcCUUCGuUAUUGGCUGg------GUCC- -5'
23055 3' -53.5 NC_005178.1 + 22521 0.67 0.670286
Target:  5'- aCACCCaGGAauaacccaccccAGCAGaggGACCGcCCCuGGc -3'
miRNA:   3'- -GUGGG-CCU------------UCGUUa--UUGGCuGGGuCC- -5'
23055 3' -53.5 NC_005178.1 + 23124 0.66 0.726132
Target:  5'- -uCCCGGAGGaaau-ACCG-CCCAGc -3'
miRNA:   3'- guGGGCCUUCguuauUGGCuGGGUCc -5'
23055 3' -53.5 NC_005178.1 + 23175 0.66 0.737051
Target:  5'- gCACCUGGuGAGCAcu-GCCGAgCCGu- -3'
miRNA:   3'- -GUGGGCC-UUCGUuauUGGCUgGGUcc -5'
23055 3' -53.5 NC_005178.1 + 23337 0.66 0.726132
Target:  5'- cUACCUGGgcGaCGA-GAUCGGCaCCGGGg -3'
miRNA:   3'- -GUGGGCCuuC-GUUaUUGGCUG-GGUCC- -5'
23055 3' -53.5 NC_005178.1 + 23465 0.72 0.37291
Target:  5'- gCGCCCGGc-GCGA-AGCCGGCCCGc- -3'
miRNA:   3'- -GUGGGCCuuCGUUaUUGGCUGGGUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.